Difference between revisions of "HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN"

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(Created page with "Category:reaction == Reaction ADENOSYLHOMOCYSTEINASE-RXN == * direction: ** reversible * common-name: ** s-adenosylhomocysteine hydrolase * ec-number: ** [http://enzyme.ex...")
(Created page with "Category:reaction == Reaction D-PPENTOMUT-RXN == * direction: ** reversible * common-name: ** d-deoxyribose 1,5-phosphomutase ** deoxyribose 1,5-phosphomutase * ec-number:...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ADENOSYLHOMOCYSTEINASE-RXN ==
+
== Reaction D-PPENTOMUT-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** s-adenosylhomocysteine hydrolase
+
** d-deoxyribose 1,5-phosphomutase
 +
** deoxyribose 1,5-phosphomutase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.3.1.1 ec-3.3.1.1]
+
** [http://enzyme.expasy.org/EC/5.4.2.7 ec-5.4.2.7]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[ADENOSINE]][c] '''+''' 1 [[HOMO-CYS]][c]
+
* 1 [[DEOXY-D-RIBOSE-1-PHOSPHATE]][c] '''<=>''' 1 [[DEOXY-RIBOSE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07466]]
+
* Gene: [[SJ05004]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[METHIONINE-DEG1-PWY]], L-methionine degradation I (to L-homocysteine):
+
* [[PWY-7180]], 2-deoxy-&alpha;-D-ribose 1-phosphate degradation:
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5041]], S-adenosyl-L-methionine cycle II:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21711 21711]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27661 27661]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00192 R00192]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02749 R02749]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P10760 P10760]
+
** [http://www.uniprot.org/uniprot/Q9CH12 Q9CH12]
−
** [http://www.uniprot.org/uniprot/P10819 P10819]
+
** [http://www.uniprot.org/uniprot/O24821 O24821]
−
** [http://www.uniprot.org/uniprot/P23526 P23526]
+
** [http://www.uniprot.org/uniprot/P0A6K6 P0A6K6]
−
** [http://www.uniprot.org/uniprot/P28183 P28183]
 
−
** [http://www.uniprot.org/uniprot/P50250 P50250]
 
−
** [http://www.uniprot.org/uniprot/P60176 P60176]
 
−
** [http://www.uniprot.org/uniprot/Q58783 Q58783]
 
−
** [http://www.uniprot.org/uniprot/O23255 O23255]
 
−
** [http://www.uniprot.org/uniprot/O27673 O27673]
 
−
** [http://www.uniprot.org/uniprot/O29376 O29376]
 
−
** [http://www.uniprot.org/uniprot/O28279 O28279]
 
−
** [http://www.uniprot.org/uniprot/P51893 P51893]
 
−
** [http://www.uniprot.org/uniprot/P50245 P50245]
 
−
** [http://www.uniprot.org/uniprot/P26799 P26799]
 
−
** [http://www.uniprot.org/uniprot/P35007 P35007]
 
−
** [http://www.uniprot.org/uniprot/P39954 P39954]
 
−
** [http://www.uniprot.org/uniprot/P50252 P50252]
 
−
** [http://www.uniprot.org/uniprot/P50249 P50249]
 
−
** [http://www.uniprot.org/uniprot/P74008 P74008]
 
−
** [http://www.uniprot.org/uniprot/P32112 P32112]
 
−
** [http://www.uniprot.org/uniprot/Q9UG84 Q9UG84]
 
−
** [http://www.uniprot.org/uniprot/Q01781 Q01781]
 
−
** [http://www.uniprot.org/uniprot/P27604 P27604]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=s-adenosylhomocysteine hydrolase}}
+
{{#set: common-name=deoxyribose 1,5-phosphomutase|d-deoxyribose 1,5-phosphomutase}}
−
{{#set: ec-number=ec-3.3.1.1}}
+
{{#set: ec-number=ec-5.4.2.7}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:06, 5 January 2021

Reaction D-PPENTOMUT-RXN

  • direction:
    • reversible
  • common-name:
    • d-deoxyribose 1,5-phosphomutase
    • deoxyribose 1,5-phosphomutase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7180, 2-deoxy-α-D-ribose 1-phosphate degradation:
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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