Difference between revisions of "Holo-VibB"

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(Created page with "Category:gene == Gene SJ04726 == * transcription-direction: ** positive * right-end-position: ** 255548 * left-end-position: ** 243155 * centisome-position: ** 48.042953...")
 
(Created page with "Category:gene == Gene SJ22333 == * transcription-direction: ** negative * right-end-position: ** 92897 * left-end-position: ** 80732 * centisome-position: ** 45.36041...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ04726 ==
+
== Gene SJ22333 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 255548
+
** 92897
 
* left-end-position:
 
* left-end-position:
−
** 243155
+
** 80732
 
* centisome-position:
 
* centisome-position:
−
** 48.042953    
+
** 45.36041    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[2.1.1.34-RXN]]
+
* [[NADH-DEHYDROG-A-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: transcription-direction=positive}}
+
** Category: [[orthology]]
−
{{#set: right-end-position=255548}}
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
{{#set: left-end-position=243155}}
+
* [[NADH-DEHYDROGENASE-QUINONE-RXN]]
−
{{#set: centisome-position=48.042953   }}
+
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[NADH-DEHYDROGENASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-5330]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[PWY0-1335]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-4302]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-3781]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-1334]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6692]]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5083]]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7279]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-1573]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7269]]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY0-1568]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-1567]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=92897}}
 +
{{#set: left-end-position=80732}}
 +
{{#set: centisome-position=45.36041   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=1}}
+
{{#set: nb reaction associated=4}}
 +
{{#set: nb pathway associated=11}}

Revision as of 14:24, 26 August 2019

Gene SJ22333

  • transcription-direction:
    • negative
  • right-end-position:
    • 92897
  • left-end-position:
    • 80732
  • centisome-position:
    • 45.36041

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY0-1335
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-4302
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-3781
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-1334
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6692
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-5083
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7279
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-1573
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7269
    • 5 reactions found over 5 reactions in the full pathway
  • PWY0-1568
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1567
    • 1 reactions found over 2 reactions in the full pathway




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