Difference between revisions of "IGPSYN-RXN"

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(Created page with "Category:reaction == Reaction RXN-14278 == * direction: ** reversible * common-name: ** hexanoyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.3.8.7 ec-...")
(Created page with "Category:reaction == Reaction RXN-4142 == * direction: ** left-to-right * common-name: ** aldehyde dehydrogenase (nad) ** fatty aldehyde dehydrogenase * ec-number: ** [htt...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-14278 ==
+
== Reaction RXN-4142 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** hexanoyl-coa dehydrogenase
+
** aldehyde dehydrogenase (nad)
 +
** fatty aldehyde dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.8.7 ec-1.3.8.7]
+
** [http://enzyme.expasy.org/EC/1.2.1.3 ec-1.2.1.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ETF-Oxidized]][c] '''+''' 1 [[HEXANOYL-COA]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[CPD0-2121]][c] '''+''' 1 [[ETF-Reduced]][c]
+
* 1 [[Fatty-Aldehydes]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Fatty-Acids]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ15262]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ09287]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06359]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05897]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ22552]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10107]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00435]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17249]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06456]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ11330]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06470]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ06047]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11331]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-2724]], alkane oxidation:
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-2501]], fatty acid &alpha;-oxidation I (plants):
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=left-to-right}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31208 31208]
+
{{#set: common-name=fatty aldehyde dehydrogenase|aldehyde dehydrogenase (nad)}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-1.2.1.3}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04751 R04751]
+
{{#set: nb gene associated=12}}
−
{{#set: direction=reversible}}
+
{{#set: nb pathway associated=2}}
−
{{#set: common-name=hexanoyl-coa dehydrogenase}}
 
−
{{#set: ec-number=ec-1.3.8.7}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=0}}
 
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:36, 5 January 2021

Reaction RXN-4142

  • direction:
    • left-to-right
  • common-name:
    • aldehyde dehydrogenase (nad)
    • fatty aldehyde dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2724, alkane oxidation:
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-2501, fatty acid α-oxidation I (plants):
    • 1 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=IGPSYN-RXN&oldid=77498"