Difference between revisions of "ILE"
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(Created page with "Category:gene == Gene SJ19938 == * transcription-direction: ** negative * right-end-position: ** 14644 * left-end-position: ** 10765 * centisome-position: ** 4.9501534...") |
(Created page with "Category:gene == Gene SJ19719 == * transcription-direction: ** positive * right-end-position: ** 180530 * left-end-position: ** 162989 * centisome-position: ** 73.356346...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ19719 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 180530 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 162989 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 73.356346 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[DIHYDROXYISOVALDEHYDRAT-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | {{#set: transcription-direction= | + | ** Category: [[orthology]] |
| − | {{#set: right-end-position= | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
| − | {{#set: left-end-position= | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | {{#set: centisome-position= | + | * [[DIHYDROXYMETVALDEHYDRAT-RXN]] |
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[PGLUCONDEHYDRAT-RXN]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN-11717]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | == Pathway(s) associated == | ||
| + | * [[VALSYN-PWY]] | ||
| + | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
| + | * [[PWY-7111]] | ||
| + | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
| + | * [[ILEUSYN-PWY]] | ||
| + | ** '''4''' reactions found over '''7''' reactions in the full pathway | ||
| + | * [[PWY-5101]] | ||
| + | ** '''4''' reactions found over '''8''' reactions in the full pathway | ||
| + | * [[PWY-5104]] | ||
| + | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
| + | * [[PWY-5103]] | ||
| + | ** '''3''' reactions found over '''7''' reactions in the full pathway | ||
| + | * [[ENTNER-DOUDOROFF-PWY]] | ||
| + | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
| + | * [[PWY-6627]] | ||
| + | ** '''3''' reactions found over '''15''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=180530}} | ||
| + | {{#set: left-end-position=162989}} | ||
| + | {{#set: centisome-position=73.356346 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=4}} |
| + | {{#set: nb pathway associated=8}} | ||
Revision as of 14:23, 26 August 2019
Contents
Gene SJ19719
- transcription-direction:
- positive
- right-end-position:
- 180530
- left-end-position:
- 162989
- centisome-position:
- 73.356346
Organism(s) associated with this gene
Reaction(s) associated
- DIHYDROXYISOVALDEHYDRAT-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- DIHYDROXYMETVALDEHYDRAT-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- PGLUCONDEHYDRAT-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-11717
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- VALSYN-PWY
- 4 reactions found over 4 reactions in the full pathway
- PWY-7111
- 4 reactions found over 5 reactions in the full pathway
- ILEUSYN-PWY
- 4 reactions found over 7 reactions in the full pathway
- PWY-5101
- 4 reactions found over 8 reactions in the full pathway
- PWY-5104
- 2 reactions found over 6 reactions in the full pathway
- PWY-5103
- 3 reactions found over 7 reactions in the full pathway
- ENTNER-DOUDOROFF-PWY
- 2 reactions found over 2 reactions in the full pathway
- PWY-6627
- 3 reactions found over 15 reactions in the full pathway
