Difference between revisions of "IMIDPHOSDEHYD-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE-KINASE-RXN CHOLINE-KINASE-RXN] == * direction: ** left-to-right * common-name: ** choline k...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDP-N-ACETYLGLUCOSAMINE-4-EPIMERASE-RXN UDP-N-ACETYLGLUCOSAMINE-4-EPIMERASE-RXN] == * direction: **...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE-KINASE-RXN CHOLINE-KINASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDP-N-ACETYLGLUCOSAMINE-4-EPIMERASE-RXN UDP-N-ACETYLGLUCOSAMINE-4-EPIMERASE-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** choline kinase
+
** udp-n-acetylglucosamine 4-epimerase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.1.32 ec-2.7.1.32]
+
** [http://enzyme.expasy.org/EC/5.1.3.7 ec-5.1.3.7]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CHOLINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PHOSPHORYL-CHOLINE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''<=>''' 1 [[CPD-14795]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18340]]
+
* Gene: [[SJ16452]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15347]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7782]], plasmalogen biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7782 PWY-7782]
+
* [[PWY-5512]], UDP-N-acetyl-D-galactosamine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5512 PWY-5512]
−
** '''11''' reactions found over '''16''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY3O-450]], phosphatidylcholine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-450 PWY3O-450]
+
* [[PWY-7820]], teichuronic acid biosynthesis (B. subtilis 168): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7820 PWY-7820]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7818]], type IV lipoteichoic acid biosynthesis (S. pneumoniae): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7818 PWY-7818]
+
* [[PWY-5514]], UDP-N-acetyl-D-galactosamine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5514 PWY-5514]
−
** '''2''' reactions found over '''19''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7886]], cell-surface glycoconjugate-linked phosphocholine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7886 PWY-7886]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12838 12838]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20520 20520]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01021 R01021]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00418 R00418]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P20485 P20485]
+
{{#set: common-name=udp-n-acetylglucosamine 4-epimerase}}
−
** [http://www.uniprot.org/uniprot/Q01134 Q01134]
+
{{#set: ec-number=ec-5.1.3.7}}
−
** [http://www.uniprot.org/uniprot/Q42809 Q42809]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/Q42810 Q42810]
+
{{#set: nb pathway associated=3}}
−
** [http://www.uniprot.org/uniprot/Q42811 Q42811]
+
{{#set: reconstruction category=annotation}}
−
{{#set: direction=left-to-right}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: common-name=choline kinase}}
 
−
{{#set: ec-number=ec-2.7.1.32}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=4}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction UDP-N-ACETYLGLUCOSAMINE-4-EPIMERASE-RXN

  • direction:
    • reversible
  • common-name:
    • udp-n-acetylglucosamine 4-epimerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5512, UDP-N-acetyl-D-galactosamine biosynthesis I: PWY-5512
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7820, teichuronic acid biosynthesis (B. subtilis 168): PWY-7820
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-5514, UDP-N-acetyl-D-galactosamine biosynthesis II: PWY-5514
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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