Difference between revisions of "IMPCYCLOHYDROLASE-RXN"

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(Created page with "Category:reaction == Reaction BUTYRYL-COA-DEHYDROGENASE-RXN == * direction: ** left-to-right * common-name: ** butanoyl-coa dehydrogenase * ec-number: ** [http://enzyme.ex...")
(Created page with "Category:reaction == Reaction RXN-17917 == * direction: ** left-to-right * common-name: ** dna ligase (atp) == Reaction formula == * 1 ATP[c] '''+''' 1 DNA-Ligase-L-...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction BUTYRYL-COA-DEHYDROGENASE-RXN ==
+
== Reaction RXN-17917 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** butanoyl-coa dehydrogenase
+
** dna ligase (atp)
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/1.3.8.1 ec-1.3.8.1]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CROTONYL-COA]][c] '''+''' 1 [[ETF-Reduced]][c] '''=>''' 1 [[BUTYRYL-COA]][c] '''+''' 1 [[ETF-Oxidized]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[DNA-Ligase-L-lysine]][c] '''=>''' 1 [[DNA-Ligase-L-lysine-adenylate]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19669]]
+
* Gene: [[SJ13521]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15543]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16080]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6583]], pyruvate fermentation to butanol I:
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5022]], 4-aminobutanoate degradation V:
 
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5676]], acetyl-CoA fermentation to butanoate II:
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[P163-PWY]], L-lysine fermentation to acetate and butanoate:
 
−
** '''3''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-5677]], succinate fermentation to butanoate:
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
−
* [[CENTFERM-PWY]], pyruvate fermentation to butanoate:
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
 
−
** '''7''' reactions found over '''11''' reactions in the full pathway
 
−
* [[P3-PWY]], gallate degradation III (anaerobic):
 
−
** '''3''' reactions found over '''11''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24006 24006]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01178 R01178]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=butanoyl-coa dehydrogenase}}
+
{{#set: common-name=dna ligase (atp)}}
−
{{#set: ec-number=ec-1.3.8.1}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=8}}
 
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:26, 15 January 2021

Reaction RXN-17917

  • direction:
    • left-to-right
  • common-name:
    • dna ligase (atp)

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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