Difference between revisions of "ISOCHORSYN-RXN"

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(Created page with "Category:reaction == Reaction RXN0-901 == * direction: ** reversible * common-name: ** xanthine:nad+ oxidoreductase * ec-number: ** [http://enzyme.expasy.org/EC/1.17.1.4 e...")
(Created page with "Category:reaction == Reaction RXN3O-178 == * direction: ** left-to-right * common-name: ** sam:c-24 sterol methyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-901 ==
+
== Reaction RXN3O-178 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** xanthine:nad+ oxidoreductase
+
** sam:c-24 sterol methyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.17.1.4 ec-1.17.1.4]
+
** [http://enzyme.expasy.org/EC/2.1.1.41 ec-2.1.1.41]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[XANTHINE]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[URATE]][c]
+
* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[ZYMOSTEROL]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[FECOSTEROL]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ05905]]
−
* Gene: [[SJ13098]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ09766]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13101]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ05673]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ05660]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05674]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13100]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ05668]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13095]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-6075]], ergosterol biosynthesis I:
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
** '''10''' reactions found over '''24''' reactions in the full pathway
 
−
* [[P164-PWY]], purine nucleobases degradation I (anaerobic):
 
−
** '''6''' reactions found over '''17''' reactions in the full pathway
 
−
* [[PWY-6596]], adenosine nucleotides degradation I:
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6606]], guanosine nucleotides degradation II:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6607]], guanosine nucleotides degradation I:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6999]], theophylline degradation:
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6608]], guanosine nucleotides degradation III:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6538]], caffeine degradation III (bacteria, via demethylation):
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5695]], inosine 5'-phosphate degradation:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16672 16672]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21129 21129]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02103 R02103]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04427 R04427]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q62637 Q62637]
+
** [http://www.uniprot.org/uniprot/P25087 P25087]
−
** [http://www.uniprot.org/uniprot/P22811 P22811]
+
** [http://www.uniprot.org/uniprot/Q39227 Q39227]
−
** [http://www.uniprot.org/uniprot/Q12553 Q12553]
+
** [http://www.uniprot.org/uniprot/O49215 O49215]
−
** [http://www.uniprot.org/uniprot/P08793 P08793]
+
** [http://www.uniprot.org/uniprot/O24153 O24153]
−
** [http://www.uniprot.org/uniprot/P10351 P10351]
+
** [http://www.uniprot.org/uniprot/O24154 O24154]
−
** [http://www.uniprot.org/uniprot/Q7M0I7 Q7M0I7]
+
** [http://www.uniprot.org/uniprot/P93852 P93852]
−
** [http://www.uniprot.org/uniprot/Q7M0I8 Q7M0I8]
+
** [http://www.uniprot.org/uniprot/Q43445 Q43445]
−
** [http://www.uniprot.org/uniprot/Q7M0I9 Q7M0I9]
+
** [http://www.uniprot.org/uniprot/Q41586 Q41586]
−
** [http://www.uniprot.org/uniprot/P47990 P47990]
+
** [http://www.uniprot.org/uniprot/O24328 O24328]
−
** [http://www.uniprot.org/uniprot/P47989 P47989]
+
** [http://www.uniprot.org/uniprot/O14321 O14321]
−
** [http://www.uniprot.org/uniprot/Q00519 Q00519]
+
{{#set: direction=left-to-right}}
−
{{#set: direction=reversible}}
+
{{#set: common-name=sam:c-24 sterol methyltransferase}}
−
{{#set: common-name=xanthine:nad+ oxidoreductase}}
+
{{#set: ec-number=ec-2.1.1.41}}
−
{{#set: ec-number=ec-1.17.1.4}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=10}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:35, 5 January 2021

Reaction RXN3O-178

  • direction:
    • left-to-right
  • common-name:
    • sam:c-24 sterol methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6075, ergosterol biosynthesis I:
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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