Difference between revisions of "ISOVALERYLCOA-DHLIPOAMIDE-RXN"

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(Created page with "Category:reaction == Reaction PHOSGLYPHOS-RXN == * direction: ** reversible * common-name: ** phosphoglycerate kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.2.3...")
(Created page with "Category:reaction == Reaction RIBOFLAVINSYNDEAM-RXN == * direction: ** left-to-right * common-name: ** diaminohydroxyphosphoribosylaminopyrimidine deaminase * ec-number: *...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PHOSGLYPHOS-RXN ==
+
== Reaction RIBOFLAVINSYNDEAM-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** phosphoglycerate kinase
+
** diaminohydroxyphosphoribosylaminopyrimidine deaminase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.2.3 ec-2.7.2.3]
+
** [http://enzyme.expasy.org/EC/3.5.4.26 ec-3.5.4.26]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[G3P]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[DPG]][c]
+
* 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-602]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ22508]]
−
* Gene: [[SJ15992]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05024]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15991]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ18020]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15971]]
+
* Gene: [[SJ17550]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10780]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
−
* [[PWY66-399]], gluconeogenesis III:
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[GLUCONEO-PWY]], gluconeogenesis I:
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[P124-PWY]], Bifidobacterium shunt:
 
−
** '''12''' reactions found over '''15''' reactions in the full pathway
 
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[P122-PWY]], heterolactic fermentation:
 
−
** '''16''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-1042]], glycolysis IV (plant cytosol):
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7003]], glycerol degradation to butanol:
 
−
** '''8''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 
−
** '''10''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered):
 
−
** '''8''' reactions found over '''5''' reactions in the full pathway
 
−
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis):
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14804 14804]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21869 21869]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01512 R01512]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03459 R03459]
−
* UNIPROT:
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P11977 P11977]
+
{{#set: common-name=diaminohydroxyphosphoribosylaminopyrimidine deaminase}}
−
** [http://www.uniprot.org/uniprot/P09411 P09411]
+
{{#set: ec-number=ec-3.5.4.26}}
−
** [http://www.uniprot.org/uniprot/P09041 P09041]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/P07205 P07205]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/P16617 P16617]
 
−
** [http://www.uniprot.org/uniprot/Q37743 Q37743]
 
−
** [http://www.uniprot.org/uniprot/Q58058 Q58058]
 
−
** [http://www.uniprot.org/uniprot/P56154 P56154]
 
−
** [http://www.uniprot.org/uniprot/O29119 O29119]
 
−
** [http://www.uniprot.org/uniprot/Q01655 Q01655]
 
−
** [http://www.uniprot.org/uniprot/Q9URB3 Q9URB3]
 
−
** [http://www.uniprot.org/uniprot/P47542 P47542]
 
−
** [http://www.uniprot.org/uniprot/O27121 O27121]
 
−
** [http://www.uniprot.org/uniprot/Q9PMQ5 Q9PMQ5]
 
−
** [http://www.uniprot.org/uniprot/P40924 P40924]
 
−
** [http://www.uniprot.org/uniprot/P43726 P43726]
 
−
** [http://www.uniprot.org/uniprot/O66519 O66519]
 
−
** [http://www.uniprot.org/uniprot/Q9JWS8 Q9JWS8]
 
−
** [http://www.uniprot.org/uniprot/Q9CIW1 Q9CIW1]
 
−
** [http://www.uniprot.org/uniprot/P36204 P36204]
 
−
** [http://www.uniprot.org/uniprot/Q59181 Q59181]
 
−
** [http://www.uniprot.org/uniprot/P50319 P50319]
 
−
** [http://www.uniprot.org/uniprot/P50310 P50310]
 
−
** [http://www.uniprot.org/uniprot/P51903 P51903]
 
−
** [http://www.uniprot.org/uniprot/P18912 P18912]
 
−
** [http://www.uniprot.org/uniprot/P41757 P41757]
 
−
** [http://www.uniprot.org/uniprot/P27362 P27362]
 
−
** [http://www.uniprot.org/uniprot/P24269 P24269]
 
−
** [http://www.uniprot.org/uniprot/P00560 P00560]
 
−
** [http://www.uniprot.org/uniprot/P25055 P25055]
 
−
** [http://www.uniprot.org/uniprot/Q01604 Q01604]
 
−
** [http://www.uniprot.org/uniprot/P00558 P00558]
 
−
** [http://www.uniprot.org/uniprot/P07377 P07377]
 
−
** [http://www.uniprot.org/uniprot/P07378 P07378]
 
−
** [http://www.uniprot.org/uniprot/P14828 P14828]
 
−
** [http://www.uniprot.org/uniprot/P09404 P09404]
 
−
** [http://www.uniprot.org/uniprot/P29408 P29408]
 
−
** [http://www.uniprot.org/uniprot/P20972 P20972]
 
−
** [http://www.uniprot.org/uniprot/P20971 P20971]
 
−
** [http://www.uniprot.org/uniprot/P24590 P24590]
 
−
** [http://www.uniprot.org/uniprot/P29409 P29409]
 
−
** [http://www.uniprot.org/uniprot/P33161 P33161]
 
−
** [http://www.uniprot.org/uniprot/P29405 P29405]
 
−
** [http://www.uniprot.org/uniprot/P50317 P50317]
 
−
** [http://www.uniprot.org/uniprot/P50315 P50315]
 
−
** [http://www.uniprot.org/uniprot/P29407 P29407]
 
−
** [http://www.uniprot.org/uniprot/P61884 P61884]
 
−
** [http://www.uniprot.org/uniprot/Q42542 Q42542]
 
−
** [http://www.uniprot.org/uniprot/P50318 P50318]
 
−
** [http://www.uniprot.org/uniprot/P46712 P46712]
 
−
** [http://www.uniprot.org/uniprot/P78018 P78018]
 
−
** [http://www.uniprot.org/uniprot/Q49073 Q49073]
 
−
** [http://www.uniprot.org/uniprot/Q42961 Q42961]
 
−
** [http://www.uniprot.org/uniprot/Q42962 Q42962]
 
−
** [http://www.uniprot.org/uniprot/O81394 O81394]
 
−
** [http://www.uniprot.org/uniprot/P41758 P41758]
 
−
** [http://www.uniprot.org/uniprot/O32756 O32756]
 
−
** [http://www.uniprot.org/uniprot/P38667 P38667]
 
−
** [http://www.uniprot.org/uniprot/P08966 P08966]
 
−
** [http://www.uniprot.org/uniprot/P08967 P08967]
 
−
** [http://www.uniprot.org/uniprot/P0A799 P0A799]
 
−
** [http://www.uniprot.org/uniprot/P09188 P09188]
 
−
** [http://www.uniprot.org/uniprot/P14228 P14228]
 
−
** [http://www.uniprot.org/uniprot/P08891 P08891]
 
−
** [http://www.uniprot.org/uniprot/P08892 P08892]
 
−
** [http://www.uniprot.org/uniprot/P08893 P08893]
 
−
** [http://www.uniprot.org/uniprot/P12782 P12782]
 
−
** [http://www.uniprot.org/uniprot/P12783 P12783]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=phosphoglycerate kinase}}
 
−
{{#set: ec-number=ec-2.7.2.3}}
 
−
{{#set: nb gene associated=6}}
 
−
{{#set: nb pathway associated=14}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:02, 14 January 2021

Reaction RIBOFLAVINSYNDEAM-RXN

  • direction:
    • left-to-right
  • common-name:
    • diaminohydroxyphosphoribosylaminopyrimidine deaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants):
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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