Difference between revisions of "IVCDH"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-II-RXN GTP-CYCLOHYDRO-II-RXN] == * direction: ** left-to-right * common-name: ** gtp...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17573 RXN-17573] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-II-RXN GTP-CYCLOHYDRO-II-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17573 RXN-17573] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** gtp cyclohydrolase
 
−
** gtp cyclohydrolase ii
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.4.25 ec-3.5.4.25]
+
** [http://enzyme.expasy.org/EC/2.5.1.58 ec-2.5.1.58]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GTP]][c] '''+''' 3 [[WATER]][c] '''=>''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c]
+
* 1 [[CAAX-proteins]][c] '''+''' 1 [[FARNESYL-PP]][c] '''=>''' 1 [[Farnesylated-CAAX-proteins]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17329]]
+
* Gene: [[SJ06255]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ05001]]
+
* Gene: [[SJ17982]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7539 PWY-7539]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23705 23705]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00425 R00425]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P0A7I7 P0A7I7]
 
−
** [http://www.uniprot.org/uniprot/Q9PNU4 Q9PNU4]
 
−
** [http://www.uniprot.org/uniprot/O08315 O08315]
 
−
** [http://www.uniprot.org/uniprot/O66679 O66679]
 
−
** [http://www.uniprot.org/uniprot/Q9PHU4 Q9PHU4]
 
−
** [http://www.uniprot.org/uniprot/O25484 O25484]
 
−
** [http://www.uniprot.org/uniprot/P0A5V0 P0A5V0]
 
−
** [http://www.uniprot.org/uniprot/P0A7I8 P0A7I8]
 
−
** [http://www.uniprot.org/uniprot/P43525 P43525]
 
−
** [http://www.uniprot.org/uniprot/P17620 P17620]
 
−
** [http://www.uniprot.org/uniprot/P38066 P38066]
 
−
** [http://www.uniprot.org/uniprot/P50139 P50139]
 
−
** [http://www.uniprot.org/uniprot/P74104 P74104]
 
−
** [http://www.uniprot.org/uniprot/O24019 O24019]
 
−
** [http://www.uniprot.org/uniprot/P51695 P51695]
 
−
** [http://www.uniprot.org/uniprot/P50855 P50855]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=gtp cyclohydrolase|gtp cyclohydrolase ii}}
+
{{#set: ec-number=ec-2.5.1.58}}
−
{{#set: ec-number=ec-3.5.4.25}}
 
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:26, 26 August 2019

Reaction RXN-17573

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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