Difference between revisions of "IVCDH"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17573 RXN-17573] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENPRIBOSYLTRAN-RXN ADENPRIBOSYLTRAN-RXN] == * direction: ** left-to-right * common-name: ** adeni...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENPRIBOSYLTRAN-RXN ADENPRIBOSYLTRAN-RXN] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** adenine phosphoribosyltransferase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2. | + | ** [http://enzyme.expasy.org/EC/2.4.2.7 ec-2.4.2.7] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ADENINE]][c] '''+''' 1 [[PRPP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ15126]] |
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ12523]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-7807]], glyphosate degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7807 PWY-7807] | ||
+ | ** '''2''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6610]], adenine salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6610 PWY-6610] | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7805]], (aminomethyl)phosphonate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7805 PWY-7805] | ||
+ | ** '''2''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6605]], adenine and adenosine salvage II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6605 PWY-6605] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[P121-PWY]], adenine and adenosine salvage I: [http://metacyc.org/META/NEW-IMAGE?object=P121-PWY P121-PWY] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16609 16609] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00190 R00190] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P12426 P12426] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9X1A4 Q9X1A4] | ||
+ | ** [http://www.uniprot.org/uniprot/P47202 P47202] | ||
+ | ** [http://www.uniprot.org/uniprot/O34443 O34443] | ||
+ | ** [http://www.uniprot.org/uniprot/O25296 O25296] | ||
+ | ** [http://www.uniprot.org/uniprot/P47518 P47518] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PP06 Q9PP06] | ||
+ | ** [http://www.uniprot.org/uniprot/P43856 P43856] | ||
+ | ** [http://www.uniprot.org/uniprot/O51718 O51718] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZLQ9 Q9ZLQ9] | ||
+ | ** [http://www.uniprot.org/uniprot/P69503 P69503] | ||
+ | ** [http://www.uniprot.org/uniprot/P07741 P07741] | ||
+ | ** [http://www.uniprot.org/uniprot/P08030 P08030] | ||
+ | ** [http://www.uniprot.org/uniprot/P31166 P31166] | ||
+ | ** [http://www.uniprot.org/uniprot/P36973 P36973] | ||
+ | ** [http://www.uniprot.org/uniprot/P52561 P52561] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42563 Q42563] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49639 Q49639] | ||
+ | ** [http://www.uniprot.org/uniprot/P73935 P73935] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SUW2 Q9SUW2] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43199 Q43199] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SU38 Q9SU38] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: ec-number=ec-2. | + | {{#set: common-name=adenine phosphoribosyltransferase}} |
+ | {{#set: ec-number=ec-2.4.2.7}} | ||
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=5}} |
− | {{#set: reconstruction category=orthology | + | {{#set: reconstruction category=annotation|orthology}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Revision as of 09:30, 27 August 2019
Contents
Reaction ADENPRIBOSYLTRAN-RXN
- direction:
- left-to-right
- common-name:
- adenine phosphoribosyltransferase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ15126
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ12523
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-7807, glyphosate degradation III: PWY-7807
- 2 reactions found over 7 reactions in the full pathway
- PWY-6610, adenine salvage: PWY-6610
- 2 reactions found over 3 reactions in the full pathway
- PWY-7805, (aminomethyl)phosphonate degradation: PWY-7805
- 2 reactions found over 8 reactions in the full pathway
- PWY-6605, adenine and adenosine salvage II: PWY-6605
- 1 reactions found over 2 reactions in the full pathway
- P121-PWY, adenine and adenosine salvage I: P121-PWY
- 2 reactions found over 2 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links