Difference between revisions of "KDPGALDOL-RXN"

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(Created page with "Category:reaction == Reaction PROTOPORGENOXI-RXN == * direction: ** left-to-right * common-name: ** protoporphyrinogen oxidase * ec-number: ** [http://enzyme.expasy.org/EC...")
(Created page with "Category:reaction == Reaction KDPGALDOL-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55] ** [http://enzyme.expasy.or...")
 
(4 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PROTOPORGENOXI-RXN ==
+
== Reaction KDPGALDOL-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** protoporphyrinogen oxidase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.3.4 ec-1.3.3.4]
+
** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55]
 +
** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 3 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''=>''' 3 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c]
+
* 1 [[2-KETO-3-DEOXY-6-P-GLUCONATE]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21798]]
+
* Gene: [[SJ03464]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
+
* [[PWY-6507]], 4-deoxy-L-threo-hex-4-enopyranuronate degradation:
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
+
* [[PWY-7310]], D-glucosaminate degradation:
−
** '''5''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
+
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
 
** '''6''' reactions found over '''9''' reactions in the full pathway
 
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
+
* [[ENTNER-DOUDOROFF-PWY]], Entner-Doudoroff shunt:
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7562]], 3,6-anhydro-α-L-galactopyranose degradation:
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7242]], D-fructuronate degradation:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[GALACTUROCAT-PWY]], D-galacturonate degradation I:
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR97897
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25577 25577]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17090 17090]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05605 R05605]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P50336 P50336]
+
** [http://www.uniprot.org/uniprot/P44480 P44480]
−
** [http://www.uniprot.org/uniprot/Q49404 Q49404]
+
** [http://www.uniprot.org/uniprot/P0A955 P0A955]
−
** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
+
** [http://www.uniprot.org/uniprot/P00885 P00885]
−
** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
+
** [http://www.uniprot.org/uniprot/Q9JR44 Q9JR44]
−
** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
+
** [http://www.uniprot.org/uniprot/O25729 O25729]
−
** [http://www.uniprot.org/uniprot/P51175 P51175]
+
** [http://www.uniprot.org/uniprot/Q9ZKB4 Q9ZKB4]
−
** [http://www.uniprot.org/uniprot/O24163 O24163]
+
** [http://www.uniprot.org/uniprot/O83578 O83578]
−
** [http://www.uniprot.org/uniprot/O24164 O24164]
+
** [http://www.uniprot.org/uniprot/Q9WXS1 Q9WXS1]
−
** [http://www.uniprot.org/uniprot/O64384 O64384]
+
** [http://www.uniprot.org/uniprot/P50846 P50846]
−
** [http://www.uniprot.org/uniprot/O64385 O64385]
+
** [http://www.uniprot.org/uniprot/P38448 P38448]
 +
** [http://www.uniprot.org/uniprot/Q55872 Q55872]
 +
** [http://www.uniprot.org/uniprot/P94802 P94802]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=protoporphyrinogen oxidase}}
+
{{#set: ec-number=ec-4.1.2.55|ec-4.1.2.14}}
−
{{#set: ec-number=ec-1.3.3.4}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Latest revision as of 11:25, 18 March 2021

Reaction KDPGALDOL-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6507, 4-deoxy-L-threo-hex-4-enopyranuronate degradation:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7310, D-glucosaminate degradation:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative):
    • 6 reactions found over 9 reactions in the full pathway
  • ENTNER-DOUDOROFF-PWY, Entner-Doudoroff shunt:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7562, 3,6-anhydro-α-L-galactopyranose degradation:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7242, D-fructuronate degradation:
    • 1 reactions found over 4 reactions in the full pathway
  • GALACTUROCAT-PWY, D-galacturonate degradation I:
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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