Difference between revisions of "LEU-tRNAs"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9614 RXN-9614] == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8675 RXN-8675] == * direction: ** left-to-right * common-name: ** s-adenosyl-l-methionine:preco...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8675 RXN-8675] == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
− | * | + | * common-name: |
− | ** | + | ** s-adenosyl-l-methionine:precorrin-1 c-methyltransferase |
+ | * synonymous: | ||
+ | ** s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect) | ||
+ | ** uroporphyrin-iii c-methyltransferase (incorrect) | ||
+ | ** adenosylmethionine-uroporphyrinogen iii methyltransferase | ||
+ | ** s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase | ||
+ | ** sira | ||
+ | ** cysg | ||
+ | ** uroporphyrinogen methyltransferase | ||
+ | ** uroporphyrinogen-iii methyltransferase | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[CPD-9038]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIHYDROSIROHYDROCHLORIN]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ12313]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-7376]], cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7376 PWY-7376] | ||
+ | ** '''2''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7377 PWY-7377] | ||
+ | ** '''4''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[PWY-5196]], factor 430 biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5196 PWY-5196] | ||
+ | ** '''3''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-5194]], siroheme biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5194 PWY-5194] | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21973 21973] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R07238 R07238] |
− | + | {{#set: direction=left-to-right}} | |
− | + | {{#set: common-name=s-adenosyl-l-methionine:precorrin-1 c-methyltransferase}} | |
− | {{#set: | + | {{#set: synonymous=sira|s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase|cysg|uroporphyrinogen methyltransferase|s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)|uroporphyrin-iii c-methyltransferase (incorrect)|uroporphyrinogen-iii methyltransferase|adenosylmethionine-uroporphyrinogen iii methyltransferase}} |
− | {{#set: | ||
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=4}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 14:25, 26 August 2019
Contents
Reaction RXN-8675
- direction:
- left-to-right
- common-name:
- s-adenosyl-l-methionine:precorrin-1 c-methyltransferase
- synonymous:
- s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)
- uroporphyrin-iii c-methyltransferase (incorrect)
- adenosylmethionine-uroporphyrinogen iii methyltransferase
- s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase
- sira
- cysg
- uroporphyrinogen methyltransferase
- uroporphyrinogen-iii methyltransferase
Reaction formula
- 1 CPD-9038[c] + 1 S-ADENOSYLMETHIONINE[c] => 1 ADENOSYL-HOMO-CYS[c] + 1 DIHYDROSIROHYDROCHLORIN[c]
Gene(s) associated with this reaction
- Gene: SJ12313
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7376, cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation): PWY-7376
- 2 reactions found over 13 reactions in the full pathway
- PWY-7377, cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion): PWY-7377
- 4 reactions found over 15 reactions in the full pathway
- PWY-5196, factor 430 biosynthesis: PWY-5196
- 3 reactions found over 7 reactions in the full pathway
- PWY-5194, siroheme biosynthesis: PWY-5194
- 4 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links