Difference between revisions of "LYSOPHOSPHOLIPASE-RXN"

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(Created page with "Category:reaction == Reaction RXN-9758 == * direction: ** left-to-right * common-name: ** aldehyde dehydrogenase (nad) ** dimethylsulfoniopropionate dehydrogenase * ec-num...")
(Created page with "Category:reaction == Reaction LYSOPHOSPHOLIPASE-RXN == * direction: ** left-to-right * common-name: ** lysophospholipase * ec-number: ** [http://enzyme.expasy.org/EC/3.1.1...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9758 ==
+
== Reaction LYSOPHOSPHOLIPASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** aldehyde dehydrogenase (nad)
+
** lysophospholipase
−
** dimethylsulfoniopropionate dehydrogenase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.2.1.3 ec-1.2.1.3]
+
** [http://enzyme.expasy.org/EC/3.1.1.5 ec-3.1.1.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-10472]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[SS-DIMETHYL-BETA-PROPIOTHETIN]][c]
+
* 1 [[2-Lysophosphatidylcholines]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Carboxylates]][c] '''+''' 1 [[L-1-GLYCERO-PHOSPHORYLCHOLINE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ22552]]
+
* Gene: [[SJ04408]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ06470]]
+
* Gene: [[SJ03124]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19560]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ06047]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ09511]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ11331]]
+
* Gene: [[SJ21109]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ00435]]
+
* Gene: [[SJ16853]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ17249]]
+
* Gene: [[SJ16448]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ05897]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07752]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ06359]]
+
* Gene: [[SJ06461]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ10107]]
+
* Gene: [[SJ16427]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06456]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ09287]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11330]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6054]], dimethylsulfoniopropanoate biosynthesis I (Wollastonia):
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6055]], dimethylsulfoniopropanoate biosynthesis II (Spartina):
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR107704
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02746 R02746]
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15177 15177]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O07427 O07427]
 +
** [http://www.uniprot.org/uniprot/Q7M3V3 Q7M3V3]
 +
** [http://www.uniprot.org/uniprot/P07000 P07000]
 +
** [http://www.uniprot.org/uniprot/P0ADA1 P0ADA1]
 +
** [http://www.uniprot.org/uniprot/P39457 P39457]
 +
** [http://www.uniprot.org/uniprot/Q03674 Q03674]
 +
** [http://www.uniprot.org/uniprot/P53541 P53541]
 +
** [http://www.uniprot.org/uniprot/P78854 P78854]
 +
** [http://www.uniprot.org/uniprot/O42970 O42970]
 +
** [http://www.uniprot.org/uniprot/Q9P327 Q9P327]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dimethylsulfoniopropionate dehydrogenase|aldehyde dehydrogenase (nad)}}
+
{{#set: common-name=lysophospholipase}}
−
{{#set: ec-number=ec-1.2.1.3}}
+
{{#set: ec-number=ec-3.1.1.5}}
−
{{#set: nb gene associated=12}}
+
{{#set: nb gene associated=10}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction LYSOPHOSPHOLIPASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • lysophospholipase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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