Difference between revisions of "Leader-Sequences"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] == * direction: ** reversible * common-name: ** geranyl diphosphate synthase...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NUCLEOSIDE-DIP-KIN-RXN NUCLEOSIDE-DIP-KIN-RXN] == * direction: ** left-to-right * common-name: ** n...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NUCLEOSIDE-DIP-KIN-RXN NUCLEOSIDE-DIP-KIN-RXN] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** geranyl diphosphate synthase
+
** nucleoside diphosphate kinase
−
** prenyltransferase
 
−
** dimethylallyltranstransferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.1 ec-2.5.1.1]
+
** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-4211]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[GERANYL-PP]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[Nucleoside-Diphosphates]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[Nucleoside-Triphosphates]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ20033]]
+
* Gene: [[SJ07124]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ18424]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03479]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02885]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10781]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ10418]]
+
* Gene: [[SJ21705]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ00173]]
+
* Gene: [[SJ20794]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17982]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ19255]]
+
* Gene: [[SJ21816]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ09945]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ18127]]
+
* Gene: [[SJ08159]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15410]]
+
* Gene: [[SJ21967]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ01234]]
+
* Gene: [[SJ16893]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07213]]
+
* Gene: [[SJ20076]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ10125]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04802]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ18388]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18409]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06255]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ09061]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ10333]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10346]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00009]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ20712]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13532]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7410]], ipsdienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7410 PWY-7410]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
 
−
** '''3''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5122]], geranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5122 PWY-5122]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-7141]], (3S)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7141 PWY-7141]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7659]], viridicatumtoxin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7659 PWY-7659]
 
−
** '''1''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7709]], (3R)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7709 PWY-7709]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7182]], linalool biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7182 PWY-7182]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18114 18114]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01658 R01658]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00331 R00331]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P08524 P08524]
+
** [http://www.uniprot.org/uniprot/P15531 P15531]
−
** [http://www.uniprot.org/uniprot/P05369 P05369]
+
** [http://www.uniprot.org/uniprot/P15266 P15266]
−
** [http://www.uniprot.org/uniprot/P14324 P14324]
+
** [http://www.uniprot.org/uniprot/P19804 P19804]
−
** [http://www.uniprot.org/uniprot/P46376 P46376]
+
** [http://www.uniprot.org/uniprot/Q05982 Q05982]
−
** [http://www.uniprot.org/uniprot/Q45220 Q45220]
+
** [http://www.uniprot.org/uniprot/P15532 P15532]
−
** [http://www.uniprot.org/uniprot/P49350 P49350]
+
** [http://www.uniprot.org/uniprot/P22887 P22887]
−
** [http://www.uniprot.org/uniprot/Q50891 Q50891]
+
** [http://www.uniprot.org/uniprot/P22392 P22392]
−
** [http://www.uniprot.org/uniprot/P49349 P49349]
+
** [http://www.uniprot.org/uniprot/P65533 P65533]
−
** [http://www.uniprot.org/uniprot/Q09152 Q09152]
+
** [http://www.uniprot.org/uniprot/O84508 O84508]
−
** [http://www.uniprot.org/uniprot/P49351 P49351]
+
** [http://www.uniprot.org/uniprot/P84284 P84284]
−
** [http://www.uniprot.org/uniprot/P49352 P49352]
+
** [http://www.uniprot.org/uniprot/P43802 P43802]
−
** [http://www.uniprot.org/uniprot/Q43315 Q43315]
+
** [http://www.uniprot.org/uniprot/O26358 O26358]
−
** [http://www.uniprot.org/uniprot/O24241 O24241]
+
** [http://www.uniprot.org/uniprot/P56075 P56075]
−
** [http://www.uniprot.org/uniprot/O24242 O24242]
+
** [http://www.uniprot.org/uniprot/O67528 O67528]
−
** [http://www.uniprot.org/uniprot/Q92334 Q92334]
+
** [http://www.uniprot.org/uniprot/O83974 O83974]
−
** [http://www.uniprot.org/uniprot/Q92218 Q92218]
+
** [http://www.uniprot.org/uniprot/O29491 O29491]
−
** [http://www.uniprot.org/uniprot/Q92235 Q92235]
+
** [http://www.uniprot.org/uniprot/Q9ZE91 Q9ZE91]
−
** [http://www.uniprot.org/uniprot/Q92250 Q92250]
+
** [http://www.uniprot.org/uniprot/Q58661 Q58661]
−
** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
+
** [http://www.uniprot.org/uniprot/Q9PIG7 Q9PIG7]
−
** [http://www.uniprot.org/uniprot/P49353 P49353]
+
** [http://www.uniprot.org/uniprot/Q13232 Q13232]
−
** [http://www.uniprot.org/uniprot/O04882 O04882]
+
** [http://www.uniprot.org/uniprot/P48817 P48817]
−
** [http://www.uniprot.org/uniprot/O65004 O65004]
+
** [http://www.uniprot.org/uniprot/P0A763 P0A763]
 +
** [http://www.uniprot.org/uniprot/P08879 P08879]
 +
** [http://www.uniprot.org/uniprot/Q02254 Q02254]
 +
** [http://www.uniprot.org/uniprot/Q01402 Q01402]
 +
** [http://www.uniprot.org/uniprot/Q01768 Q01768]
 +
** [http://www.uniprot.org/uniprot/P47922 P47922]
 +
** [http://www.uniprot.org/uniprot/P36010 P36010]
 +
** [http://www.uniprot.org/uniprot/Q07661 Q07661]
 +
** [http://www.uniprot.org/uniprot/Q9S8M2 Q9S8M2]
 +
** [http://www.uniprot.org/uniprot/P47921 P47921]
 +
** [http://www.uniprot.org/uniprot/P47923 P47923]
 +
** [http://www.uniprot.org/uniprot/P81766 P81766]
 +
** [http://www.uniprot.org/uniprot/P50589 P50589]
 +
** [http://www.uniprot.org/uniprot/P74494 P74494]
 +
** [http://www.uniprot.org/uniprot/Q59636 Q59636]
 +
** [http://www.uniprot.org/uniprot/O49203 O49203]
 +
** [http://www.uniprot.org/uniprot/Q39839 Q39839]
 +
** [http://www.uniprot.org/uniprot/Q96559 Q96559]
 +
** [http://www.uniprot.org/uniprot/P39207 P39207]
 +
** [http://www.uniprot.org/uniprot/Q9ZGE0 Q9ZGE0]
 +
** [http://www.uniprot.org/uniprot/P49740 P49740]
 +
** [http://www.uniprot.org/uniprot/Q9UUY8 Q9UUY8]
 +
** [http://www.uniprot.org/uniprot/O64903 O64903]
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=dimethylallyltranstransferase|geranyl diphosphate synthase|prenyltransferase}}
+
{{#set: common-name=nucleoside diphosphate kinase}}
−
{{#set: ec-number=ec-2.5.1.1}}
+
{{#set: ec-number=ec-2.7.4.6}}
−
{{#set: nb gene associated=24}}
+
{{#set: nb gene associated=9}}
−
{{#set: nb pathway associated=11}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:24, 26 August 2019

Reaction NUCLEOSIDE-DIP-KIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • nucleoside diphosphate kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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