Leader-Sequences

Reaction GPPSYN-RXN

• direction:
  • reversible
• common-name:
  • geranyl diphosphate synthase
  • prenyltransferase
  • dimethylallyltranstransferase
• ec-number:
  • ec-2.5.1.1

Reaction formula

• 1 CPD-4211[c] + 1 DELTA3-ISOPENTENYL-PP[c] <=> 1 GERANYL-PP[c] + 1 PPI[c]

Gene(s) associated with this reaction

• Gene: SJ20033
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
• Gene: SJ18424
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
• Gene: SJ03479
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
  • Category: orthology
    • Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
• Gene: SJ02885
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
• Gene: SJ10781
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
  • Category: orthology
    • Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
• Gene: SJ10418
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
  • Category: orthology
    • Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
• Gene: SJ00173
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
  • Category: orthology
    • Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
• Gene: SJ17982
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
• Gene: SJ19255
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
• Gene: SJ09945
  • Category: orthology
    • Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
• Gene: SJ18127
  • Category: orthology
    • Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
• Gene: SJ15410
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
• Gene: SJ01234
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
  • Category: orthology
    • Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
• Gene: SJ07213
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
  • Category: orthology
    • Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
• Gene: SJ04802
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
• Gene: SJ18388
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
• Gene: SJ18409
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
• Gene: SJ06255
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
• Gene: SJ09061
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
  • Category: orthology
    • Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
• Gene: SJ10333
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
  • Category: orthology
    • Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
• Gene: SJ10346
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
  • Category: orthology
    • Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
    • Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
• Gene: SJ00009
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
• Gene: SJ20712
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
• Gene: SJ13532
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a

Pathway(s)

• PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis: PWY-6383
  • 2 reactions found over 5 reactions in the full pathway
• PWY-7410, ipsdienol biosynthesis: PWY-7410
  • 1 reactions found over 4 reactions in the full pathway
• PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
  • 3 reactions found over 6 reactions in the full pathway
• PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
  • 3 reactions found over 4 reactions in the full pathway
• PWY-7736, stellatic acid biosynthesis: PWY-7736
  • 3 reactions found over 8 reactions in the full pathway
• PWY-5122, geranyl diphosphate biosynthesis: PWY-5122
  • 1 reactions found over 1 reactions in the full pathway
• PWY-7141, (3S)-linalool biosynthesis: PWY-7141
  • 1 reactions found over 2 reactions in the full pathway
• PWY-7659, viridicatumtoxin biosynthesis: PWY-7659
  • 1 reactions found over 9 reactions in the full pathway
• PWY-7709, (3R)-linalool biosynthesis: PWY-7709
  • 1 reactions found over 2 reactions in the full pathway
• PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
  • 3 reactions found over 3 reactions in the full pathway
• PWY-7182, linalool biosynthesis I: PWY-7182
  • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

• category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
• category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
• category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
• category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a

External links

• RHEA:
  • 22408
• LIGAND-RXN:
  • R01658
• UNIPROT:
  • P08524
  • P05369
  • P14324
  • P46376
  • Q45220
  • P49350
  • Q50891
  • P49349
  • Q09152
  • P49351
  • P49352
  • Q43315
  • O24241
  • O24242
  • Q92334
  • Q92218
  • Q92235
  • Q92250
  • Q8L7F4
  • P49353
  • O04882
  • O65004