Difference between revisions of "Lipid-hydroxy-fatty-acids"

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(Created page with "Category:gene == Gene SJ12647 == * transcription-direction: ** negative * right-end-position: ** 114210 * left-end-position: ** 88629 * centisome-position: ** 24.852295...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11919 RXN-11919] == * direction: ** left-to-right * common-name: ** (2e)-5-methylhexa-2,4-dieno...")
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[[Category:gene]]
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[[Category:reaction]]
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== Gene SJ12647 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11919 RXN-11919] ==
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* transcription-direction:
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* direction:
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** negative
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** left-to-right
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* right-end-position:
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* common-name:
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** 114210
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** (2e)-5-methylhexa-2,4-dienoyl-coa hydratase
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* left-end-position:
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* ec-number:
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** 88629
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** [http://enzyme.expasy.org/EC/4.2.1 ec-4.2.1]
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* centisome-position:
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== Reaction formula ==
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** 24.852295   
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* 1 [[CPD-12904]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-12905]][c]
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== Organism(s) associated with this gene  ==
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== Gene(s) associated with this reaction  ==
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* [[S.japonica_carotenoid_curated]]
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* Gene: [[SJ03913]]
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== Reaction(s) associated ==
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** Category: [[orthology]]
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* [[ATPASE-RXN]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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** Category: [[annotation]]
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== Pathway(s) ==
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-6672]], cis-genanyl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6672 PWY-6672]
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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** Category: [[annotation]]
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== Reconstruction information  ==
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-11135]]
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== External links  ==
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** Category: [[annotation]]
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* LIGAND-RXN:
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** [http://www.genome.jp/dbget-bin/www_bget?R08093 R08093]
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* [[RXN-12195]]
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{{#set: direction=left-to-right}}
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** Category: [[annotation]]
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{{#set: common-name=(2e)-5-methylhexa-2,4-dienoyl-coa hydratase}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: ec-number=ec-4.2.1}}
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* [[RXN-12196]]
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{{#set: nb gene associated=1}}
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** Category: [[annotation]]
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{{#set: nb pathway associated=1}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: reconstruction category=orthology}}
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* [[RXN0-5462]]
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{{#set: reconstruction tool=pantograph}}
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** Category: [[annotation]]
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{{#set: reconstruction comment=n.a}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana}}
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== Pathway(s) associated ==
 
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* [[PWY-7210]]
 
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** '''8''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-7198]]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7184]]
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-6545]]
 
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** '''8''' reactions found over '''9''' reactions in the full pathway
 
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{{#set: transcription-direction=negative}}
 
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{{#set: right-end-position=114210}}
 
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{{#set: left-end-position=88629}}
 
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{{#set: centisome-position=24.852295    }}
 
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{{#set: organism associated=S.japonica_carotenoid_curated}}
 
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{{#set: nb reaction associated=6}}
 
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{{#set: nb pathway associated=4}}
 

Revision as of 14:24, 26 August 2019

Reaction RXN-11919

  • direction:
    • left-to-right
  • common-name:
    • (2e)-5-methylhexa-2,4-dienoyl-coa hydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6672, cis-genanyl-CoA degradation: PWY-6672
    • 4 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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