Difference between revisions of "Long-Chain-Acyl-CoAs"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMIDOTRANS-RXN GLUTAMIDOTRANS-RXN] == * direction: ** left-to-right * common-name: ** imidazole...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NARINGENIN-3-DIOXYGENASE-RXN NARINGENIN-3-DIOXYGENASE-RXN] == * direction: ** left-to-right * ec-nu...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMIDOTRANS-RXN GLUTAMIDOTRANS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NARINGENIN-3-DIOXYGENASE-RXN NARINGENIN-3-DIOXYGENASE-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** imidazoleglycerol-phosphate synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.3.2.m2 ec-4.3.2.m2]
+
** [http://enzyme.expasy.org/EC/1.14.11.9 ec-1.14.11.9]
 
* synonymous:
 
* synonymous:
−
** imidazole glycerol phosphate synthase cyclase subunit (ec 4.1.3.-)
+
** flavonone 3-hydroxylase
−
** imidazole glycerol phosphate synthase amidotransferase subunit (ec 2.4.2.-)
+
** naringenin,2-oxoglutarate 3-dioxygenase
−
** imidazole glycerol phosphate synthase cyclase subunit
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLN]][c] '''+''' 1 [[PHOSPHORIBULOSYL-FORMIMINO-AICAR-P]][c] '''=>''' 1 [[AICAR]][c] '''+''' 1 [[D-ERYTHRO-IMIDAZOLE-GLYCEROL-P]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[NARINGENIN-CMPD]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DIHYDROKAEMPFEROL-CMPD]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19186]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** Category: [[annotation]]
+
* Gene: [[SJ14675]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14677]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14672]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08018]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14670]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07557]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ12953]]
+
</div>
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[HISTSYN-PWY]], L-histidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HISTSYN-PWY HISTSYN-PWY]
+
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24793 24793]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04558 R04558]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02444 R02444]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P28038 P28038]
 +
** [http://www.uniprot.org/uniprot/Q07353 Q07353]
 +
** [http://www.uniprot.org/uniprot/Q06942 Q06942]
 +
** [http://www.uniprot.org/uniprot/Q05964 Q05964]
 +
** [http://www.uniprot.org/uniprot/Q05963 Q05963]
 +
** [http://www.uniprot.org/uniprot/Q05965 Q05965]
 +
** [http://www.uniprot.org/uniprot/Q43741 Q43741]
 +
** [http://www.uniprot.org/uniprot/Q42927 Q42927]
 +
** [http://www.uniprot.org/uniprot/Q40344 Q40344]
 +
** [http://www.uniprot.org/uniprot/O49047 O49047]
 +
** [http://www.uniprot.org/uniprot/Q43262 Q43262]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=imidazoleglycerol-phosphate synthase}}
+
{{#set: ec-number=ec-1.14.11.9}}
−
{{#set: ec-number=ec-4.3.2.m2}}
+
{{#set: synonymous=naringenin,2-oxoglutarate 3-dioxygenase|flavonone 3-hydroxylase}}
−
{{#set: synonymous=imidazole glycerol phosphate synthase amidotransferase subunit (ec 2.4.2.-)|imidazole glycerol phosphate synthase cyclase subunit|imidazole glycerol phosphate synthase cyclase subunit (ec 4.1.3.-)}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:25, 26 August 2019

Reaction NARINGENIN-3-DIOXYGENASE-RXN

  • direction:
    • left-to-right
  • ec-number:
  • synonymous:
    • flavonone 3-hydroxylase
    • naringenin,2-oxoglutarate 3-dioxygenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY1F-FLAVSYN, flavonoid biosynthesis: PWY1F-FLAVSYN
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6787, flavonoid biosynthesis (in equisetum): PWY-6787
    • 6 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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