Difference between revisions of "Long-linear-glucans"

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(Created page with "Category:gene == Gene SJ20230 == * transcription-direction: ** negative * right-end-position: ** 145572 * left-end-position: ** 115658 * centisome-position: ** 54.763092...")
(Created page with "Category:gene == Gene SJ02279 == * transcription-direction: ** positive * right-end-position: ** 97684 * left-end-position: ** 80393 * centisome-position: ** 57.882084...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ20230 ==
+
== Gene SJ02279 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 145572
+
** 97684
 
* left-end-position:
 
* left-end-position:
−
** 115658
+
** 80393
 
* centisome-position:
 
* centisome-position:
−
** 54.763092    
+
** 57.882084    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[PROTEIN-KINASE-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[PHOSMANMUT-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
{{#set: transcription-direction=negative}}
+
* [[PHOSPHOGLUCMUT-RXN]]
−
{{#set: right-end-position=145572}}
+
** Category: [[annotation]]
−
{{#set: left-end-position=115658}}
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: centisome-position=54.763092   }}
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-16997]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-16998]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[PWY-5659]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7456]]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7586]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-882]]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6737]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7238]]
 +
** '''5''' reactions found over '''8''' reactions in the full pathway
 +
* [[GLYCOGENSYNTH-PWY]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[GLUCOSE1PMETAB-PWY]]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7900]]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6731]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5941]]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[GLYCOCAT-PWY]]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-622]]
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6317]]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-2723]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-3801]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7343]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5940]]
 +
** '''2''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-7902]]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5384]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5661]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY66-422]]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=97684}}
 +
{{#set: left-end-position=80393}}
 +
{{#set: centisome-position=57.882084   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=1}}
+
{{#set: nb reaction associated=4}}
 +
{{#set: nb pathway associated=22}}

Revision as of 09:28, 27 August 2019

Gene SJ02279

  • transcription-direction:
    • positive
  • right-end-position:
    • 97684
  • left-end-position:
    • 80393
  • centisome-position:
    • 57.882084

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5659
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7456
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-7586
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-882
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-6737
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7238
    • 5 reactions found over 8 reactions in the full pathway
  • GLYCOGENSYNTH-PWY
    • 1 reactions found over 4 reactions in the full pathway
  • GLUCOSE1PMETAB-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7900
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6731
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5941
    • 3 reactions found over 6 reactions in the full pathway
  • GLYCOCAT-PWY
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-622
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-6317
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-2723
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-3801
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7343
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5940
    • 2 reactions found over 18 reactions in the full pathway
  • PWY-7902
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5384
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5661
    • 2 reactions found over 3 reactions in the full pathway
  • PWY66-422
    • 5 reactions found over 5 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=Long-linear-glucans&oldid=34269"