Difference between revisions of "M7G5-pppm6Am-mRNAs"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCONOLACT-RXN GLUCONOLACT-RXN] == * direction: ** left-to-right * common-name: ** gluconolactonas...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERDEAM-RXN HOMOSERDEAM-RXN] == * direction: ** left-to-right * common-name: ** cystathionine g...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCONOLACT-RXN GLUCONOLACT-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERDEAM-RXN HOMOSERDEAM-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** gluconolactonase
+
** cystathionine gamma-lyase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.1.17 ec-3.1.1.17]
+
** [http://enzyme.expasy.org/EC/4.4.1.1 ec-4.4.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLC-D-LACTONE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLUCONATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[HOMO-SER]][c] '''=>''' 1 [[2-OXOBUTANOATE]][c] '''+''' 1 [[AMMONIUM]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05433]]
+
* Gene: [[SJ05357]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ19511]]
+
* Gene: [[SJ05358]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ05432]]
+
* Gene: [[SJ20026]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GLUCOSE1PMETAB-PWY]], glucose and glucose-1-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE1PMETAB-PWY GLUCOSE1PMETAB-PWY]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[DHGLUCONATE-PYR-CAT-PWY]], glucose degradation (oxidative): [http://metacyc.org/META/NEW-IMAGE?object=DHGLUCONATE-PYR-CAT-PWY DHGLUCONATE-PYR-CAT-PWY]
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY]
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5530]], sorbitol biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5530 PWY-5530]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7165]], L-ascorbate biosynthesis VI (engineered pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7165 PWY-7165]
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10441 10441]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24924 24924]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01519 R01519]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q01578 Q01578]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=gluconolactonase}}
+
{{#set: common-name=cystathionine gamma-lyase}}
−
{{#set: ec-number=ec-3.1.1.17}}
+
{{#set: ec-number=ec-4.4.1.1}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:29, 27 August 2019

Reaction HOMOSERDEAM-RXN

  • direction:
    • left-to-right
  • common-name:
    • cystathionine gamma-lyase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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