Difference between revisions of "MALIC-NADP-RXN"
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(Created page with "Category:reaction == Reaction RXN-17109 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.330 ec-1.1.1.330] == Reaction formula == * 1 ...") |
(Created page with "Category:reaction == Reaction MALIC-NADP-RXN == * direction: ** left-to-right * common-name: ** malate dehydrogenase ** oxaloacetate decarboxylase * ec-number: ** [http://...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction MALIC-NADP-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** malate dehydrogenase | ||
+ | ** oxaloacetate decarboxylase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1.1.1. | + | ** [http://enzyme.expasy.org/EC/1.1.1.40 ec-1.1.1.40] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[MAL]][c] '''+''' 1 [[NADP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PYRUVATE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ13180]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ14191]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ11643]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: |
− | ** ''' | + | ** '''10''' reactions found over '''14''' reactions in the full pathway |
+ | * [[GLUCONEO-PWY]], gluconeogenesis I: | ||
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type: | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR101443 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18254 18254] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00216 R00216] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P12628 P12628] | ||
+ | ** [http://www.uniprot.org/uniprot/P06801 P06801] | ||
+ | ** [http://www.uniprot.org/uniprot/P13697 P13697] | ||
+ | ** [http://www.uniprot.org/uniprot/P16243 P16243] | ||
+ | ** [http://www.uniprot.org/uniprot/O48656 O48656] | ||
+ | ** [http://www.uniprot.org/uniprot/P22178 P22178] | ||
+ | ** [http://www.uniprot.org/uniprot/P93139 P93139] | ||
+ | ** [http://www.uniprot.org/uniprot/P34105 P34105] | ||
+ | ** [http://www.uniprot.org/uniprot/P28227 P28227] | ||
+ | ** [http://www.uniprot.org/uniprot/P36444 P36444] | ||
+ | ** [http://www.uniprot.org/uniprot/P40927 P40927] | ||
+ | ** [http://www.uniprot.org/uniprot/P37223 P37223] | ||
+ | ** [http://www.uniprot.org/uniprot/P48163 P48163] | ||
+ | ** [http://www.uniprot.org/uniprot/Q16798 Q16798] | ||
+ | ** [http://www.uniprot.org/uniprot/O50015 O50015] | ||
+ | ** [http://www.uniprot.org/uniprot/O04935 O04935] | ||
+ | ** [http://www.uniprot.org/uniprot/O04936 O04936] | ||
+ | ** [http://www.uniprot.org/uniprot/P37222 P37222] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42888 Q42888] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42889 Q42889] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: ec-number=ec-1.1.1. | + | {{#set: common-name=malate dehydrogenase|oxaloacetate decarboxylase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-1.1.1.40}} |
− | {{#set: nb pathway associated= | + | {{#set: nb gene associated=3}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: nb pathway associated=3}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction category=orthology|annotation}} |
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Latest revision as of 11:23, 18 March 2021
Contents
Reaction MALIC-NADP-RXN
- direction:
- left-to-right
- common-name:
- malate dehydrogenase
- oxaloacetate decarboxylase
- ec-number:
Reaction formula
- 1 MAL[c] + 1 NADP[c] => 1 CARBON-DIOXIDE[c] + 1 NADPH[c] + 1 PYRUVATE[c]
Gene(s) associated with this reaction
- Gene: SJ13180
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ14191
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ11643
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type:
- 10 reactions found over 14 reactions in the full pathway
- GLUCONEO-PWY, gluconeogenesis I:
- 12 reactions found over 13 reactions in the full pathway
- PWY-241, C4 photosynthetic carbon assimilation cycle, NADP-ME type:
- 5 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links