Difference between revisions of "MCDH LPAREN 2mb2coa RPAREN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8661 RXN-8661] == * direction: ** left-to-right * common-name: ** [histone-h3]-lysine-36 demeth...")
 
(Created page with "Category:reaction == Reaction MCDH_LPAREN_2mb2coa_RPAREN_ == * direction: ** left-to-right * common-name: ** 2-methylacyl-coa dehydrogenase, trans-2-methylbut-2-enoyl-coa...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8661 RXN-8661] ==
+
== Reaction MCDH_LPAREN_2mb2coa_RPAREN_ ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** [histone-h3]-lysine-36 demethylase
+
** 2-methylacyl-coa dehydrogenase, trans-2-methylbut-2-enoyl-coa forming
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** histone demethylase activity (h3-k36 specific)
 
−
* ec-number:
 
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** [http://enzyme.expasy.org/EC/1.14.11 ec-1.14.11]
 
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* synonymous:
 
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** protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
 
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** histone demethylase
 
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** jmjc domain-containing histone demethylase 1a
 
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** histone-lysine (h3-k36) demethylase
 
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** h3-k36-specific demethylase
 
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** jhdm1a
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-8901]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[Protein-L-lysine]][c] '''+''' 1 [[SUC]][c]
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* 1.0 [[2-METHYL-BUTYRYL-COA]][m] '''+''' 1.0 [[FAD]][m] '''=>''' 1.0 [[CPD-1083]][m] '''+''' 1.0 [[FADH2]][m]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18735]]
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* Gene: [[SJ07241]]
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** Category: [[annotation]]
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** Category: [[orthology]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ05371]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ19102]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ00708]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ13421]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ19354]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10785 10785]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=histone demethylase activity (h3-k36 specific)|[histone-h3]-lysine-36 demethylase}}
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{{#set: common-name=2-methylacyl-coa dehydrogenase, trans-2-methylbut-2-enoyl-coa forming}}
−
{{#set: ec-number=ec-1.14.11}}
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{{#set: nb gene associated=1}}
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{{#set: synonymous=histone-lysine (h3-k36) demethylase|jmjc domain-containing histone demethylase 1a|histone demethylase|protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase|jhdm1a|h3-k36-specific demethylase}}
 
−
{{#set: nb gene associated=6}}
 
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Latest revision as of 11:22, 18 March 2021

Reaction MCDH_LPAREN_2mb2coa_RPAREN_

  • direction:
    • left-to-right
  • common-name:
    • 2-methylacyl-coa dehydrogenase, trans-2-methylbut-2-enoyl-coa forming

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=MCDH_LPAREN_2mb2coa_RPAREN&oldid=141884"