Difference between revisions of "METHANOL-DEHYDROGENASE-RXN"

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(Created page with "Category:reaction == Reaction URACIL-PRIBOSYLTRANS-RXN == * direction: ** left-to-right * common-name: ** uracil phosphoribosyltransferase * ec-number: ** [http://enzyme.e...")
(Created page with "Category:reaction == Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** serine palmitoyltransferase * ec-number: ** [http://enzy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction URACIL-PRIBOSYLTRANS-RXN ==
+
== Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** uracil phosphoribosyltransferase
+
** serine palmitoyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.2.9 ec-2.4.2.9]
+
** [http://enzyme.expasy.org/EC/2.3.1.50 ec-2.3.1.50]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PRPP]][c] '''+''' 1 [[URACIL]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[UMP]][c]
+
* 1 [[PALMITYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[DEHYDROSPHINGANINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16689]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ01689]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05058]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ18806]]
+
* Gene: [[SJ13300]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ11023]]
+
* Gene: [[SJ01690]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ02034]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7183]], pyrimidine nucleobases salvage I:
+
* [[PWY3DJ-12]], ceramide de novo biosynthesis:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast):
 +
** '''4''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5129]], sphingolipid biosynthesis (plants):
 +
** '''4''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR104347
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13017 13017]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14762 14762]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00966 R00966]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P0A8F0 P0A8F0]
+
** [http://www.uniprot.org/uniprot/P25045 P25045]
−
** [http://www.uniprot.org/uniprot/P39765 P39765]
+
** [http://www.uniprot.org/uniprot/O15270 O15270]
−
** [http://www.uniprot.org/uniprot/Q9CEC9 Q9CEC9]
+
** [http://www.uniprot.org/uniprot/P48241 P48241]
−
** [http://www.uniprot.org/uniprot/P47276 P47276]
+
** [http://www.uniprot.org/uniprot/Q09925 Q09925]
−
** [http://www.uniprot.org/uniprot/O27186 O27186]
+
** [http://www.uniprot.org/uniprot/P40970 P40970]
−
** [http://www.uniprot.org/uniprot/P43857 P43857]
+
** [http://www.uniprot.org/uniprot/Q9XVI6 Q9XVI6]
−
** [http://www.uniprot.org/uniprot/O67914 O67914]
+
** [http://www.uniprot.org/uniprot/Q20375 Q20375]
−
** [http://www.uniprot.org/uniprot/P44722 P44722]
+
** [http://www.uniprot.org/uniprot/Q9M304 Q9M304]
−
** [http://www.uniprot.org/uniprot/Q9PN13 Q9PN13]
 
−
** [http://www.uniprot.org/uniprot/P65941 P65941]
 
−
** [http://www.uniprot.org/uniprot/P39149 P39149]
 
−
** [http://www.uniprot.org/uniprot/P18562 P18562]
 
−
** [http://www.uniprot.org/uniprot/P41007 P41007]
 
−
** [http://www.uniprot.org/uniprot/P72753 P72753]
 
−
** [http://www.uniprot.org/uniprot/Q55758 Q55758]
 
−
** [http://www.uniprot.org/uniprot/P93394 P93394]
 
−
** [http://www.uniprot.org/uniprot/O65583 O65583]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=uracil phosphoribosyltransferase}}
+
{{#set: common-name=serine palmitoyltransferase}}
−
{{#set: ec-number=ec-2.4.2.9}}
+
{{#set: ec-number=ec-2.3.1.50}}
 
{{#set: nb gene associated=4}}
 
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:39, 15 March 2021

Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • serine palmitoyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY3DJ-12, ceramide de novo biosynthesis:
    • 2 reactions found over 4 reactions in the full pathway
  • SPHINGOLIPID-SYN-PWY, sphingolipid biosynthesis (yeast):
    • 4 reactions found over 11 reactions in the full pathway
  • PWY-5129, sphingolipid biosynthesis (plants):
    • 4 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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