Difference between revisions of "METHENYLTHFCYCLOHYDRO-RXN"

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(Created page with "Category:reaction == Reaction DIAMINOPIMDECARB-RXN == * direction: ** left-to-right * common-name: ** diaminopimelate decarboxylase * ec-number: ** [http://enzyme.expasy.o...")
(Created page with "Category:reaction == Reaction METHENYLTHFCYCLOHYDRO-RXN == * direction: ** reversible * common-name: ** methenyltetrahydrofolate cyclohydrolase * ec-number: ** [http://enz...")
 
(4 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DIAMINOPIMDECARB-RXN ==
+
== Reaction METHENYLTHFCYCLOHYDRO-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** diaminopimelate decarboxylase
+
** methenyltetrahydrofolate cyclohydrolase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.20 ec-4.1.1.20]
+
** [http://enzyme.expasy.org/EC/3.5.4.9 ec-3.5.4.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c]
+
* 1 [[5-10-METHENYL-THF-GLU-N]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09103]]
+
* Gene: [[SJ12991]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ10799]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
* Gene: [[SJ00674]]
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17385]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ21359]]
+
* Gene: [[SJ11954]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2942]], L-lysine biosynthesis III:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
* [[1CMET2-PWY]], folate transformations III (E. coli):
−
* [[PWY-5097]], L-lysine biosynthesis VI:
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
−
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
+
** '''10''' reactions found over '''24''' reactions in the full pathway
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
* [[P164-PWY]], purine nucleobases degradation I (anaerobic):
−
* [[PWY-2941]], L-lysine biosynthesis II:
+
** '''6''' reactions found over '''15''' reactions in the full pathway
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria):
 +
** '''4''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5030]], L-histidine degradation III:
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7909]], formaldehyde oxidation VII (THF pathway):
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-3841]], folate transformations II (plants):
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-2201]], folate transformations I:
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6613]], tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR116053
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15102 15102]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23703 23703]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01655 R01655]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P19572 P19572]
+
** [http://www.uniprot.org/uniprot/P09440 P09440]
−
** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
+
** [http://www.uniprot.org/uniprot/P07245 P07245]
−
** [http://www.uniprot.org/uniprot/P44316 P44316]
+
** [http://www.uniprot.org/uniprot/P11586 P11586]
−
** [http://www.uniprot.org/uniprot/P56129 P56129]
+
** [http://www.uniprot.org/uniprot/P18155 P18155]
−
** [http://www.uniprot.org/uniprot/O67262 O67262]
+
** [http://www.uniprot.org/uniprot/P44313 P44313]
−
** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
+
** [http://www.uniprot.org/uniprot/P47259 P47259]
−
** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
+
** [http://www.uniprot.org/uniprot/P13995 P13995]
−
** [http://www.uniprot.org/uniprot/P00861 P00861]
+
** [http://www.uniprot.org/uniprot/P54382 P54382]
−
** [http://www.uniprot.org/uniprot/O27390 O27390]
+
** [http://www.uniprot.org/uniprot/O67736 O67736]
−
** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
+
** [http://www.uniprot.org/uniprot/Q9JWI9 Q9JWI9]
−
** [http://www.uniprot.org/uniprot/Q58497 Q58497]
+
** [http://www.uniprot.org/uniprot/Q9PP68 Q9PP68]
−
** [http://www.uniprot.org/uniprot/O29458 O29458]
+
** [http://www.uniprot.org/uniprot/P24186 P24186]
−
** [http://www.uniprot.org/uniprot/P41023 P41023]
+
** [http://www.uniprot.org/uniprot/Q04448 Q04448]
−
** [http://www.uniprot.org/uniprot/P23630 P23630]
+
** [http://www.uniprot.org/uniprot/Q60006 Q60006]
−
** [http://www.uniprot.org/uniprot/P09890 P09890]
+
** [http://www.uniprot.org/uniprot/Q27772 Q27772]
−
** [http://www.uniprot.org/uniprot/Q55484 Q55484]
+
** [http://www.uniprot.org/uniprot/P51696 P51696]
−
** [http://www.uniprot.org/uniprot/O05321 O05321]
+
** [http://www.uniprot.org/uniprot/O68031 O68031]
 +
** [http://www.uniprot.org/uniprot/Q9ZTV0 Q9ZTV0]
 +
** [http://www.uniprot.org/uniprot/Q9X7F6 Q9X7F6]
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=diaminopimelate decarboxylase}}
+
{{#set: common-name=methenyltetrahydrofolate cyclohydrolase}}
−
{{#set: ec-number=ec-4.1.1.20}}
+
{{#set: ec-number=ec-3.5.4.9}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=10}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction METHENYLTHFCYCLOHYDRO-RXN

  • direction:
    • reversible
  • common-name:
    • methenyltetrahydrofolate cyclohydrolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • 1CMET2-PWY, folate transformations III (E. coli):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic):
    • 10 reactions found over 24 reactions in the full pathway
  • P164-PWY, purine nucleobases degradation I (anaerobic):
    • 6 reactions found over 15 reactions in the full pathway
  • CODH-PWY, reductive acetyl coenzyme A pathway I (homoacetogenic bacteria):
    • 4 reactions found over 10 reactions in the full pathway
  • PWY-5030, L-histidine degradation III:
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7909, formaldehyde oxidation VII (THF pathway):
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-3841, folate transformations II (plants):
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-2201, folate transformations I:
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-6613, tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-1722, formate assimilation into 5,10-methylenetetrahydrofolate:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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