Difference between revisions of "METHIONINE--TRNA-LIGASE-RXN"

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(Created page with "Category:reaction == Reaction 3.4.11.5-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.4.11.5 ec-3.4.11.5] == Reaction formula == * 1 [...")
(Created page with "Category:reaction == Reaction METHIONINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** methionine-trna ligase * ec-number: ** [http://enzyme.expasy.o...")
 
(5 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.4.11.5-RXN ==
+
== Reaction METHIONINE--TRNA-LIGASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** methionine-trna ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.4.11.5 ec-3.4.11.5]
+
** [http://enzyme.expasy.org/EC/6.1.1.10 ec-6.1.1.10]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Protein-With-N-Terminal-Pro]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PRO]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Peptides-holder]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[Elongation-tRNAMet]][c] '''+''' 1 [[MET]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-MET-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ20723]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ15542]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10034]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03581]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14459]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21346]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04411]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10455]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging:
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR116054
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13482 13482]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00135 R00135]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03659 R03659]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P46542 P46542]
+
** [http://www.uniprot.org/uniprot/P56127 P56127]
−
** [http://www.uniprot.org/uniprot/Q48570 Q48570]
+
** [http://www.uniprot.org/uniprot/Q44951 Q44951]
−
** [http://www.uniprot.org/uniprot/P47266 P47266]
+
** [http://www.uniprot.org/uniprot/P47267 P47267]
−
** [http://www.uniprot.org/uniprot/Q9JUV1 Q9JUV1]
+
** [http://www.uniprot.org/uniprot/O84035 O84035]
−
** [http://www.uniprot.org/uniprot/P23974 P23974]
+
** [http://www.uniprot.org/uniprot/O28819 O28819]
−
** [http://www.uniprot.org/uniprot/P46547 P46547]
+
** [http://www.uniprot.org/uniprot/O58721 O58721]
−
** [http://www.uniprot.org/uniprot/P94800 P94800]
+
** [http://www.uniprot.org/uniprot/O83776 O83776]
−
** [http://www.uniprot.org/uniprot/O32449 O32449]
+
** [http://www.uniprot.org/uniprot/O33925 O33925]
−
** [http://www.uniprot.org/uniprot/P28839 P28839]
+
** [http://www.uniprot.org/uniprot/Q58659 Q58659]
−
** [http://www.uniprot.org/uniprot/P42786 P42786]
+
** [http://www.uniprot.org/uniprot/O66738 O66738]
−
** [http://www.uniprot.org/uniprot/P75092 P75092]
+
** [http://www.uniprot.org/uniprot/Q9ZCP0 Q9ZCP0]
−
** [http://www.uniprot.org/uniprot/P96084 P96084]
+
** [http://www.uniprot.org/uniprot/Q9PP85 Q9PP85]
 +
** [http://www.uniprot.org/uniprot/O26687 O26687]
 +
** [http://www.uniprot.org/uniprot/O67298 O67298]
 +
** [http://www.uniprot.org/uniprot/Q9JWP0 Q9JWP0]
 +
** [http://www.uniprot.org/uniprot/Q9ZKG9 Q9ZKG9]
 +
** [http://www.uniprot.org/uniprot/Q9Z959 Q9Z959]
 +
** [http://www.uniprot.org/uniprot/Q9CHE0 Q9CHE0]
 +
** [http://www.uniprot.org/uniprot/P43828 P43828]
 +
** [http://www.uniprot.org/uniprot/P56192 P56192]
 +
** [http://www.uniprot.org/uniprot/Q50319 Q50319]
 +
** [http://www.uniprot.org/uniprot/P23920 P23920]
 +
** [http://www.uniprot.org/uniprot/P75091 P75091]
 +
** [http://www.uniprot.org/uniprot/Q55729 Q55729]
 +
** [http://www.uniprot.org/uniprot/P22438 P22438]
 +
** [http://www.uniprot.org/uniprot/P00958 P00958]
 +
** [http://www.uniprot.org/uniprot/P00959 P00959]
 +
** [http://www.uniprot.org/uniprot/Q9M2T9 Q9M2T9]
 +
** [http://www.uniprot.org/uniprot/O23761 O23761]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-3.4.11.5}}
+
{{#set: common-name=methionine-trna ligase}}
−
{{#set: nb gene associated=1}}
+
{{#set: ec-number=ec-6.1.1.10}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=7}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction METHIONINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • methionine-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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