Difference between revisions of "METHYLACYLYLCOA-HYDROXY-RXN"

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(Created page with "Category:reaction == Reaction L-GULONOLACTONE-OXIDASE-RXN == * direction: ** left-to-right * common-name: ** l-gulonolactone oxidase ** gulonolactone (l-) oxidase * synony...")
(Created page with "Category:reaction == Reaction F16BDEPHOS-RXN == * direction: ** left-to-right * common-name: ** fructose-1,6-bisphosphatase ** fructose 1,6-bisphosphate 1-phosphatase * ec...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction L-GULONOLACTONE-OXIDASE-RXN ==
+
== Reaction F16BDEPHOS-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** l-gulonolactone oxidase
+
** fructose-1,6-bisphosphatase
−
** gulonolactone (l-) oxidase
+
** fructose 1,6-bisphosphate 1-phosphatase
−
* synonymous:
+
* ec-number:
−
** l-gulono-γ-lactone: o2 oxidoreductase
+
** [http://enzyme.expasy.org/EC/3.1.3.11 ec-3.1.3.11]
−
** l-gulono-γ-lactone:oxidoreductase
 
−
** glo
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-GULONO-1-4-LACTONE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-329]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
+
* 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03311]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ14175]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ03315]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16950]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ17320]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13518]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14821]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10463]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ20807]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY3DJ-35471]], L-ascorbate biosynthesis IV:
+
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY66-399]], gluconeogenesis III:
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis):
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]], gluconeogenesis I:
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12355 12355]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11065 11065]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03184 R03184]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00762 R00762]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P10867 P10867]
+
** [http://www.uniprot.org/uniprot/P09199 P09199]
 +
** [http://www.uniprot.org/uniprot/P19112 P19112]
 +
** [http://www.uniprot.org/uniprot/P22780 P22780]
 +
** [http://www.uniprot.org/uniprot/P09467 P09467]
 +
** [http://www.uniprot.org/uniprot/Q9JUL6 Q9JUL6]
 +
** [http://www.uniprot.org/uniprot/Q9CIU9 Q9CIU9]
 +
** [http://www.uniprot.org/uniprot/P09202 P09202]
 +
** [http://www.uniprot.org/uniprot/Q45597 Q45597]
 +
** [http://www.uniprot.org/uniprot/P45292 P45292]
 +
** [http://www.uniprot.org/uniprot/Q9PP83 Q9PP83]
 +
** [http://www.uniprot.org/uniprot/P19912 P19912]
 +
** [http://www.uniprot.org/uniprot/P19911 P19911]
 +
** [http://www.uniprot.org/uniprot/Q9HGZ4 Q9HGZ4]
 +
** [http://www.uniprot.org/uniprot/P09201 P09201]
 +
** [http://www.uniprot.org/uniprot/P0A993 P0A993]
 +
** [http://www.uniprot.org/uniprot/P00636 P00636]
 +
** [http://www.uniprot.org/uniprot/P23014 P23014]
 +
** [http://www.uniprot.org/uniprot/P27994 P27994]
 +
** [http://www.uniprot.org/uniprot/P14766 P14766]
 +
** [http://www.uniprot.org/uniprot/P09195 P09195]
 +
** [http://www.uniprot.org/uniprot/Q7M0S7 Q7M0S7]
 +
** [http://www.uniprot.org/uniprot/P25851 P25851]
 +
** [http://www.uniprot.org/uniprot/Q05079 Q05079]
 +
** [http://www.uniprot.org/uniprot/P46275 P46275]
 +
** [http://www.uniprot.org/uniprot/P46276 P46276]
 +
** [http://www.uniprot.org/uniprot/Q43139 Q43139]
 +
** [http://www.uniprot.org/uniprot/P00637 P00637]
 +
** [http://www.uniprot.org/uniprot/O65827 O65827]
 +
** [http://www.uniprot.org/uniprot/Q42796 Q42796]
 +
** [http://www.uniprot.org/uniprot/P46267 P46267]
 +
** [http://www.uniprot.org/uniprot/Q07204 Q07204]
 +
** [http://www.uniprot.org/uniprot/P22418 P22418]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=l-gulonolactone oxidase|gulonolactone (l-) oxidase}}
+
{{#set: common-name=fructose 1,6-bisphosphate 1-phosphatase|fructose-1,6-bisphosphatase}}
−
{{#set: synonymous=l-gulono-&gamma;-lactone: o2 oxidoreductase|glo|l-gulono-&gamma;-lactone:oxidoreductase}}
+
{{#set: ec-number=ec-3.1.3.11}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=7}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:36, 5 January 2021

Reaction F16BDEPHOS-RXN

  • direction:
    • left-to-right
  • common-name:
    • fructose-1,6-bisphosphatase
    • fructose 1,6-bisphosphate 1-phosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
    • 11 reactions found over 12 reactions in the full pathway
  • PWY66-399, gluconeogenesis III:
    • 11 reactions found over 12 reactions in the full pathway
  • SUCSYN-PWY, sucrose biosynthesis I (from photosynthesis):
    • 6 reactions found over 7 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 12 reactions found over 13 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I:
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate):
    • 10 reactions found over 11 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate):
    • 11 reactions found over 12 reactions in the full pathway

Reconstruction information

External links





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