Difference between revisions of "METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.23.5-RXN 3.4.23.5-RXN] == * direction: ** left-to-right * common-name: ** cathepsin d * ec-numb...")
(Created page with "Category:reaction == Reaction SULFITE-REDUCT-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.8.1.2 ec-1.8.1.2] == Reaction formula == *...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.23.5-RXN 3.4.23.5-RXN] ==
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== Reaction SULFITE-REDUCT-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** cathepsin d
 
 
* ec-number:
 
* ec-number:
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** [http://enzyme.expasy.org/EC/3.4.23.5 ec-3.4.23.5]
+
** [http://enzyme.expasy.org/EC/1.8.1.2 ec-1.8.1.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[General-Protein-Substrates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Peptides-holder]][c]
+
* 3 [[NADPH]][c] '''+''' 5 [[PROTON]][c] '''+''' 1 [[SO3]][c] '''=>''' 1 [[HS]][c] '''+''' 3 [[NADP]][c] '''+''' 3 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16973]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ00305]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ16977]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[SO4ASSIM-PWY]], assimilatory sulfate reduction I:
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6683]], assimilatory sulfate reduction III:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13803 13803]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00858 R00858]
 
* UNIPROT:
 
* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q9BGU5 Q9BGU5]
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** [http://www.uniprot.org/uniprot/P38039 P38039]
−
** [http://www.uniprot.org/uniprot/Q05744 Q05744]
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** [http://www.uniprot.org/uniprot/P17845 P17845]
−
** [http://www.uniprot.org/uniprot/P07339 P07339]
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** [http://www.uniprot.org/uniprot/Q9JUD9 Q9JUD9]
−
** [http://www.uniprot.org/uniprot/P18242 P18242]
+
** [http://www.uniprot.org/uniprot/Q9JUD8 Q9JUD8]
−
** [http://www.uniprot.org/uniprot/P24268 P24268]
+
** [http://www.uniprot.org/uniprot/O32214 O32214]
 +
** [http://www.uniprot.org/uniprot/P38038 P38038]
 +
** [http://www.uniprot.org/uniprot/Q59396 Q59396]
 +
** [http://www.uniprot.org/uniprot/P17846 P17846]
 +
** [http://www.uniprot.org/uniprot/P52674 P52674]
 +
** [http://www.uniprot.org/uniprot/P39692 P39692]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
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{{#set: common-name=cathepsin d}}
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{{#set: ec-number=ec-1.8.1.2}}
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{{#set: ec-number=ec-3.4.23.5}}
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{{#set: nb gene associated=0}}
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{{#set: nb gene associated=3}}
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{{#set: nb pathway associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
 

Revision as of 20:41, 18 December 2020

Reaction SULFITE-REDUCT-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • SO4ASSIM-PWY, assimilatory sulfate reduction I:
    • 3 reactions found over 2 reactions in the full pathway
  • PWY-6683, assimilatory sulfate reduction III:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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