Difference between revisions of "CPD-10792"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLCROTONYL-COA-CARBOXYLASE-RXN METHYLCROTONYL-COA-CARBOXYLASE-RXN] == * direction: ** left-to-r...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11836 RXN-11836] == * direction: ** left-to-right * common-name: ** 23s rrna pseudouridine2605...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLCROTONYL-COA-CARBOXYLASE-RXN METHYLCROTONYL-COA-CARBOXYLASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11836 RXN-11836] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-methylcrotonyl-coa carboxylase
+
** 23s rrna pseudouridine2605 synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.4.1.4 ec-6.4.1.4]
+
** [http://enzyme.expasy.org/EC/5.4.99.22 ec-5.4.99.22]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-METHYL-CROTONYL-COA]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[TRANS-3-METHYL-GLUTACONYL-COA]][c]
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* 1 [[23S-rRNA-uridine2605]][c] '''=>''' 1 [[23S-rRNA-pseudouridine2605]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12008]]
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* Gene: [[SJ05951]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ07661]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08104]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ19835]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ02214]]
+
* Gene: [[SJ11677]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[LEU-DEG2-PWY]], L-leucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=LEU-DEG2-PWY LEU-DEG2-PWY]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13590 13590]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42521 42521]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R04138 R04138]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q40121 Q40121]
 
−
** [http://www.uniprot.org/uniprot/Q42777 Q42777]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-methylcrotonyl-coa carboxylase}}
+
{{#set: common-name=23s rrna pseudouridine2605 synthase}}
−
{{#set: ec-number=ec-6.4.1.4}}
+
{{#set: ec-number=ec-5.4.99.22}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:25, 26 August 2019

Reaction RXN-11836

  • direction:
    • left-to-right
  • common-name:
    • 23s rrna pseudouridine2605 synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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