Difference between revisions of "Meneco"

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(Created page with "Category:reaction == Reaction RXN-15561 == * direction: ** left-to-right * common-name: ** ring-type e3 ubiquitin transferase * ec-number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "{{#ask: Category:reaction reconstruction tool::meneco | ?common-name | ?ec-number | ?reconstruction category | ?reconstruction source | ?reconstruction comment | ?nb g...")
 
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[[Category:reaction]]
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{{#ask: [[Category:reaction]] [[reconstruction tool::meneco]]
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== Reaction RXN-15561 ==
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| ?common-name
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* direction:
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| ?ec-number
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** left-to-right
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| ?reconstruction category
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* common-name:
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| ?reconstruction source
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** ring-type e3 ubiquitin transferase
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| ?reconstruction comment
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* ec-number:
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| ?nb gene associated
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** [http://enzyme.expasy.org/EC/2.3.2.27 ec-2.3.2.27]
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| ?nb pathway associated
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== Reaction formula ==
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}}
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* 1 [[Protein-L-lysine]][c] '''+''' 1 [[S-ubiquitinyl-UCP-E2-L-cysteine]][c] '''=>''' 1 [[PROTEIN-N-UBIQUITYL-LYSINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Ubiquitin-carrier-protein-E2-L-cysteine]][c]
 
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== Gene(s) associated with this reaction  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* Gene: [[SJ00972]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ04102]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ06176]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ00621]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ03727]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ05626]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ02273]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ03975]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ04324]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ21686]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ11122]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ19061]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ21688]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ19253]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ21572]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ15828]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ15544]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ02711]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ00056]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ11923]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ08227]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ22546]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ04322]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ17070]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ03726]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ09000]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ14203]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ04560]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ06254]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ00781]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ06991]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ01880]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ13742]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ07233]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ22265]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ06296]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ15797]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ06602]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ12138]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ02681]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ17379]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ07569]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ12854]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ02709]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ07902]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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</div>
 
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== Pathway(s)  ==
 
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* [[PWY-7511]], protein ubiquitination:
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=ring-type e3 ubiquitin transferase}}
 
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{{#set: ec-number=ec-2.3.2.27}}
 
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{{#set: nb gene associated=45}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=annotation}}
 
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{{#set: reconstruction tool=pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=saccharina_japonica_genome}}
 

Latest revision as of 11:18, 18 March 2021

 Common-nameEc-numberReconstruction categoryReconstruction sourceReconstruction commentNb gene associatedNb pathway associated
1.5.1.20-RXN-5-METHYL-THF/NAD//METHYLENE-THF/NADH/PROTON.44.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
1.5.99.12-RXNEc-1.5.99.12Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
2-ACYLGLYCEROL-O-ACYLTRANSFERASE-RXN-CPD66-43/STEAROYL-COA//CPD-17271/CO-A.38.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
2.1.1.143-RXNEc-2.1.1.143Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
3.1.2.19-RXN-CPD-196/WATER//CPD-195/CO-A/PROTON.35.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
3.1.2.19-RXN-HEXANOYL-COA/WATER//HEXANOATE/CO-A/PROTON.42.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
3.1.4.14-RXNEc-3.1.4.14Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
ACECOATRANS-RXN-CPD-10280/ACET//TETRACOSANOATE/ACETYL-COA.42.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
ACECOATRANS-RXN-CPD-196/ACET//CPD-195/ACETYL-COA.33.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
ACECOATRANS-RXN-HEXANOYL-COA/ACET//HEXANOATE/ACETYL-COA.40.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
ACETOLACTSYN-RXNEc-2.2.1.6Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling05
ADENYLYLSULFATE-REDUCTASE-RXNEc-1.8.99.2Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling04
ALGINATE-SYNTHASE-RXNEc-2.4.1.33Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling02
CYSPH-RXNEc-2.5.1Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
CYSTATHIONASE-RXNGap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
DIAMINOPIMEPIM-RXNEc-5.1.1.7Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling03
FATTY-ACID-PEROXIDASE-RXNEc-1.11.1.3Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
FESO3OXI-RXNGap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
GLUCISOM-RXNGlucose isomeraseEc-5.3.1.5Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
GLUCISOM-RXN-ALPHA-GLUCOSE//CPD-15382.25.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
GLUCISOM-RXN-GLC//CPD-15382.15.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
HISTIDPHOS-RXNEc-3.1.3.15Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
HOMOCYSMETB12-RXN-HOMO-CYS/5-METHYL-THF//MET/THF.31.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
HOMOSERINE-O-ACETYLTRANSFERASE-RXNEc-2.3.1.31Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
HOMSUCTRAN-RXNEc-2.3.1.46Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
LINOLEOYL-RXNEc-3.1.2Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
MANNITOL-1-PHOSPHATASE-RXNEc-3.1.3.22Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling02
MANNPISOM-RXN-MANNOSE-6P//FRUCTOSE-6P.24.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
PHOSMANMUT-RXN-MANNOSE-1P//MANNOSE-6P.23.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
PHOSPHATIDATE-PHOSPHATASE-RXN-CPD0-1422/WATER//CPD66-34/Pi.29.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-10662Ec-3.1.2Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-10727Myristoyl-acp hydrolase activityEc-3.1.2.14Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-11797(r)-3-hydroxydecanoyl-coa synthaseEc-2.4.1Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-11820-STEARIC ACID/HYDROGEN-PEROXIDE//R-2-HYDROXYSTEARATE/WATER.58.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-11976Torulene synthaseEc-2.5.1Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-12559Trans-2-hexenoyl-coa reductase (nad+)Ec-1.3.1.44Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-12777Ec-2.3.1Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling02
RXN-12971Ec-1.3.1.93Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling02
RXN-13279-CPD-14916/NADP//CPD0-2106/NADPH/PROTON.39.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13307Ec-1.3.1.93Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-13308Ec-1.3.1.93Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-137094-methylsterol monooxygenaseEc-1.14.18.9Manual
Gap-filling		Gapfilling solution with meneco draft medium
Reactions add sjap		Added for gapfilling
Curation sterols (girard et al.)		00
RXN-13709-4-METHYL-824-CHOLESTADIENOL/NADH/OXYGEN-MOLECULE/PROTON//CPD-4702/NAD/WATER.76.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13709-4-METHYL-824-CHOLESTADIENOL/NADPH/OXYGEN-MOLECULE/PROTON//CPD-4702/NADP/WATER.78.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13712Ec-1.14.18.9Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13712-44-DIMETHYL-824-CHOLESTADIENOL/NADH/OXYGEN-MOLECULE/PROTON//CPD-4577/NAD/WATER.79.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13712-44-DIMETHYL-824-CHOLESTADIENOL/NADPH/OXYGEN-MOLECULE/PROTON//CPD-4577/NADP/WATER.81.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-14037Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-14246Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-14275Ec-1.1.1.m19Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
... further results
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