Difference between revisions of "Meneco"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7904 RXN-7904] == * direction: ** left-to-right * common-name: ** acyl-coa synthetase ** long-c...")
(Created page with "{{#ask: Category:reaction reconstruction tool::meneco | ?common-name | ?ec-number | ?reconstruction category | ?reconstruction source | ?reconstruction comment | ?nb g...")
 
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[[Category:reaction]]
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{{#ask: [[Category:reaction]] [[reconstruction tool::meneco]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7904 RXN-7904] ==
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| ?common-name
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* direction:
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| ?ec-number
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** left-to-right
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| ?reconstruction category
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* common-name:
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| ?reconstruction source
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** acyl-coa synthetase
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| ?reconstruction comment
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** long-chain fatty acid-coa ligase
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| ?nb gene associated
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* ec-number:
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| ?nb pathway associated
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** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
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}}
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== Reaction formula ==
 
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* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[Long-Chain-Fatty-Acids]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Long-Chain-Acyl-CoAs]][c] '''+''' 1 [[PPI]][c]
 
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== Gene(s) associated with this reaction  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* Gene: [[SJ05591]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ03650]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ08691]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ08690]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ08692]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ13972]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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</div>
 
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== Pathway(s)  ==
 
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* [[PWY-6803]], phosphatidylcholine acyl editing: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6803 PWY-6803]
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-5885]], wax esters biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5885 PWY-5885]
 
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** '''2''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-5143]], long-chain fatty acid activation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5143 PWY-5143]
 
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** '''1''' reactions found over '''1''' reactions in the full pathway
 
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* [[PWY-6873]], long chain fatty acid ester synthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6873 PWY-6873]
 
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** '''2''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-7033]], alkane biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7033 PWY-7033]
 
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** '''1''' reactions found over '''3''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15422 15422]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/O60135 O60135]
 
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** [http://www.uniprot.org/uniprot/Q9X7Z0 Q9X7Z0]
 
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** [http://www.uniprot.org/uniprot/Q9X7Y5 Q9X7Y5]
 
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** [http://www.uniprot.org/uniprot/Q9ZBW6 Q9ZBW6]
 
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** [http://www.uniprot.org/uniprot/Q9T0A0 Q9T0A0]
 
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** [http://www.uniprot.org/uniprot/Q9T009 Q9T009]
 
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** [http://www.uniprot.org/uniprot/Q96338 Q96338]
 
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** [http://www.uniprot.org/uniprot/Q96538 Q96538]
 
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** [http://www.uniprot.org/uniprot/Q96537 Q96537]
 
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** [http://www.uniprot.org/uniprot/O15840 O15840]
 
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** [http://www.uniprot.org/uniprot/O81614 O81614]
 
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** [http://www.uniprot.org/uniprot/P73004 P73004]
 
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** [http://www.uniprot.org/uniprot/P47912 P47912]
 
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** [http://www.uniprot.org/uniprot/Q8JZR0 Q8JZR0]
 
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** [http://www.uniprot.org/uniprot/P69452 P69452]
 
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** [http://www.uniprot.org/uniprot/P69451 P69451]
 
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** [http://www.uniprot.org/uniprot/Q02602 Q02602]
 
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** [http://www.uniprot.org/uniprot/P30624 P30624]
 
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** [http://www.uniprot.org/uniprot/P33124 P33124]
 
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** [http://www.uniprot.org/uniprot/P33121 P33121]
 
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** [http://www.uniprot.org/uniprot/Q9JYJ7 Q9JYJ7]
 
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** [http://www.uniprot.org/uniprot/O51539 O51539]
 
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** [http://www.uniprot.org/uniprot/O30039 O30039]
 
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** [http://www.uniprot.org/uniprot/P44446 P44446]
 
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** [http://www.uniprot.org/uniprot/Q9JTK0 Q9JTK0]
 
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** [http://www.uniprot.org/uniprot/Q9CHR0 Q9CHR0]
 
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** [http://www.uniprot.org/uniprot/Q9YCF0 Q9YCF0]
 
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** [http://www.uniprot.org/uniprot/P94547 P94547]
 
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** [http://www.uniprot.org/uniprot/Q9RTR4 Q9RTR4]
 
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** [http://www.uniprot.org/uniprot/O83181 O83181]
 
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** [http://www.uniprot.org/uniprot/Q10776 Q10776]
 
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** [http://www.uniprot.org/uniprot/Q9RYK3 Q9RYK3]
 
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** [http://www.uniprot.org/uniprot/P39002 P39002]
 
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** [http://www.uniprot.org/uniprot/O51162 O51162]
 
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** [http://www.uniprot.org/uniprot/P39518 P39518]
 
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** [http://www.uniprot.org/uniprot/P18163 P18163]
 
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* PIR:
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A36275 A36275]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54901 A54901]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A70117 A70117]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54901 B54901]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B75585 B75585]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C70762 C70762]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C71361 C71361]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C75364 C75364]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D69649 D69649]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D72605 D72605]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86707 F86707]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81798 G81798]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64041 H64041]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H69274 H69274]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70173 H70173]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81068 H81068]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JE0262 JE0262]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0202 JX0202]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0205 JX0205]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23052 S23052]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23467 S23467]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41589 S41589]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49487 S49487]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56060 S56060]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74984 S74984]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T01875 T01875]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02834 T02834]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07928 T07928]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07929 T07929]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07944 T07944]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08182 T08182]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08904 T08904]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T34994 T34994]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35430 T35430]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35513 T35513]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39766 T39766]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00390 R00390]
 
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</div>
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=long-chain fatty acid-coa ligase|acyl-coa synthetase}}
 
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{{#set: ec-number=ec-6.2.1.3}}
 
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{{#set: nb gene associated=6}}
 
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{{#set: nb pathway associated=5}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Latest revision as of 11:18, 18 March 2021

 Common-nameEc-numberReconstruction categoryReconstruction sourceReconstruction commentNb gene associatedNb pathway associated
1.5.1.20-RXN-5-METHYL-THF/NAD//METHYLENE-THF/NADH/PROTON.44.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
1.5.99.12-RXNEc-1.5.99.12Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
2-ACYLGLYCEROL-O-ACYLTRANSFERASE-RXN-CPD66-43/STEAROYL-COA//CPD-17271/CO-A.38.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
2.1.1.143-RXNEc-2.1.1.143Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
3.1.2.19-RXN-CPD-196/WATER//CPD-195/CO-A/PROTON.35.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
3.1.2.19-RXN-HEXANOYL-COA/WATER//HEXANOATE/CO-A/PROTON.42.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
3.1.4.14-RXNEc-3.1.4.14Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
ACECOATRANS-RXN-CPD-10280/ACET//TETRACOSANOATE/ACETYL-COA.42.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
ACECOATRANS-RXN-CPD-196/ACET//CPD-195/ACETYL-COA.33.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
ACECOATRANS-RXN-HEXANOYL-COA/ACET//HEXANOATE/ACETYL-COA.40.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
ACETOLACTSYN-RXNEc-2.2.1.6Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling05
ADENYLYLSULFATE-REDUCTASE-RXNEc-1.8.99.2Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling04
ALGINATE-SYNTHASE-RXNEc-2.4.1.33Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling02
CYSPH-RXNEc-2.5.1Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
CYSTATHIONASE-RXNGap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
DIAMINOPIMEPIM-RXNEc-5.1.1.7Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling03
FATTY-ACID-PEROXIDASE-RXNEc-1.11.1.3Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
FESO3OXI-RXNGap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
GLUCISOM-RXNGlucose isomeraseEc-5.3.1.5Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
GLUCISOM-RXN-ALPHA-GLUCOSE//CPD-15382.25.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
GLUCISOM-RXN-GLC//CPD-15382.15.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
HISTIDPHOS-RXNEc-3.1.3.15Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
HOMOCYSMETB12-RXN-HOMO-CYS/5-METHYL-THF//MET/THF.31.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
HOMOSERINE-O-ACETYLTRANSFERASE-RXNEc-2.3.1.31Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
HOMSUCTRAN-RXNEc-2.3.1.46Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
LINOLEOYL-RXNEc-3.1.2Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
MANNITOL-1-PHOSPHATASE-RXNEc-3.1.3.22Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling02
MANNPISOM-RXN-MANNOSE-6P//FRUCTOSE-6P.24.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
PHOSMANMUT-RXN-MANNOSE-1P//MANNOSE-6P.23.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
PHOSPHATIDATE-PHOSPHATASE-RXN-CPD0-1422/WATER//CPD66-34/Pi.29.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-10662Ec-3.1.2Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-10727Myristoyl-acp hydrolase activityEc-3.1.2.14Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-11797(r)-3-hydroxydecanoyl-coa synthaseEc-2.4.1Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-11820-STEARIC ACID/HYDROGEN-PEROXIDE//R-2-HYDROXYSTEARATE/WATER.58.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-11976Torulene synthaseEc-2.5.1Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-12559Trans-2-hexenoyl-coa reductase (nad+)Ec-1.3.1.44Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-12777Ec-2.3.1Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling02
RXN-12971Ec-1.3.1.93Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling02
RXN-13279-CPD-14916/NADP//CPD0-2106/NADPH/PROTON.39.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13307Ec-1.3.1.93Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-13308Ec-1.3.1.93Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-137094-methylsterol monooxygenaseEc-1.14.18.9Manual
Gap-filling		Gapfilling solution with meneco draft medium
Reactions add sjap		Added for gapfilling
Curation sterols (girard et al.)		00
RXN-13709-4-METHYL-824-CHOLESTADIENOL/NADH/OXYGEN-MOLECULE/PROTON//CPD-4702/NAD/WATER.76.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13709-4-METHYL-824-CHOLESTADIENOL/NADPH/OXYGEN-MOLECULE/PROTON//CPD-4702/NADP/WATER.78.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13712Ec-1.14.18.9Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13712-44-DIMETHYL-824-CHOLESTADIENOL/NADH/OXYGEN-MOLECULE/PROTON//CPD-4577/NAD/WATER.79.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13712-44-DIMETHYL-824-CHOLESTADIENOL/NADPH/OXYGEN-MOLECULE/PROTON//CPD-4577/NADP/WATER.81.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-14037Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-14246Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-14275Ec-1.1.1.m19Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
... further results
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