Difference between revisions of "Meneco"

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(Created page with "Category:reaction == Reaction AIRS-RXN == * direction: ** left-to-right * common-name: ** phosphoribosylformylglycinamide cyclo-ligase * ec-number: ** [http://enzyme.expas...")
(Created page with "{{#ask: Category:reaction reconstruction tool::meneco | ?common-name | ?ec-number | ?reconstruction category | ?reconstruction source | ?reconstruction comment | ?nb g...")
 
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[[Category:reaction]]
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{{#ask: [[Category:reaction]] [[reconstruction tool::meneco]]
== Reaction AIRS-RXN ==
+
| ?common-name
* direction:
+
| ?ec-number
** left-to-right
+
| ?reconstruction category
* common-name:
+
| ?reconstruction source
** phosphoribosylformylglycinamide cyclo-ligase
+
| ?reconstruction comment
* ec-number:
+
| ?nb gene associated
** [http://enzyme.expasy.org/EC/6.3.3.1 ec-6.3.3.1]
+
| ?nb pathway associated
== Reaction formula ==
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}}
* 1 [[5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
* Gene: [[SJ06408]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
 
** '''6''' reactions found over '''5''' reactions in the full pathway
 
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I:
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II:
 
** '''4''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23033 23033]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R04208 R04208]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P07244 P07244]
 
** [http://www.uniprot.org/uniprot/P12043 P12043]
 
** [http://www.uniprot.org/uniprot/P21872 P21872]
 
** [http://www.uniprot.org/uniprot/P08178 P08178]
 
** [http://www.uniprot.org/uniprot/P00967 P00967]
 
** [http://www.uniprot.org/uniprot/P16340 P16340]
 
** [http://www.uniprot.org/uniprot/P22102 P22102]
 
** [http://www.uniprot.org/uniprot/Q57656 Q57656]
 
** [http://www.uniprot.org/uniprot/O66968 O66968]
 
** [http://www.uniprot.org/uniprot/Q9JUA2 Q9JUA2]
 
** [http://www.uniprot.org/uniprot/P43848 P43848]
 
** [http://www.uniprot.org/uniprot/Q9PME0 Q9PME0]
 
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
 
** [http://www.uniprot.org/uniprot/P20772 P20772]
 
** [http://www.uniprot.org/uniprot/Q55422 Q55422]
 
** [http://www.uniprot.org/uniprot/P52424 P52424]
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: common-name=phosphoribosylformylglycinamide cyclo-ligase}}
 
{{#set: ec-number=ec-6.3.3.1}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 

Latest revision as of 11:18, 18 March 2021

 Common-nameEc-numberReconstruction categoryReconstruction sourceReconstruction commentNb gene associatedNb pathway associated
1.5.1.20-RXN-5-METHYL-THF/NAD//METHYLENE-THF/NADH/PROTON.44.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
1.5.99.12-RXNEc-1.5.99.12Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
2-ACYLGLYCEROL-O-ACYLTRANSFERASE-RXN-CPD66-43/STEAROYL-COA//CPD-17271/CO-A.38.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
2.1.1.143-RXNEc-2.1.1.143Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
3.1.2.19-RXN-CPD-196/WATER//CPD-195/CO-A/PROTON.35.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
3.1.2.19-RXN-HEXANOYL-COA/WATER//HEXANOATE/CO-A/PROTON.42.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
3.1.4.14-RXNEc-3.1.4.14Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
ACECOATRANS-RXN-CPD-10280/ACET//TETRACOSANOATE/ACETYL-COA.42.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
ACECOATRANS-RXN-CPD-196/ACET//CPD-195/ACETYL-COA.33.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
ACECOATRANS-RXN-HEXANOYL-COA/ACET//HEXANOATE/ACETYL-COA.40.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
ACETOLACTSYN-RXNEc-2.2.1.6Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling05
ADENYLYLSULFATE-REDUCTASE-RXNEc-1.8.99.2Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling04
ALGINATE-SYNTHASE-RXNEc-2.4.1.33Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling02
CYSPH-RXNEc-2.5.1Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
CYSTATHIONASE-RXNGap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
DIAMINOPIMEPIM-RXNEc-5.1.1.7Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling03
FATTY-ACID-PEROXIDASE-RXNEc-1.11.1.3Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
FESO3OXI-RXNGap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
GLUCISOM-RXNGlucose isomeraseEc-5.3.1.5Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
GLUCISOM-RXN-ALPHA-GLUCOSE//CPD-15382.25.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
GLUCISOM-RXN-GLC//CPD-15382.15.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
HISTIDPHOS-RXNEc-3.1.3.15Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
HOMOCYSMETB12-RXN-HOMO-CYS/5-METHYL-THF//MET/THF.31.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
HOMOSERINE-O-ACETYLTRANSFERASE-RXNEc-2.3.1.31Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
HOMSUCTRAN-RXNEc-2.3.1.46Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
LINOLEOYL-RXNEc-3.1.2Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
MANNITOL-1-PHOSPHATASE-RXNEc-3.1.3.22Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling02
MANNPISOM-RXN-MANNOSE-6P//FRUCTOSE-6P.24.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
PHOSMANMUT-RXN-MANNOSE-1P//MANNOSE-6P.23.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
PHOSPHATIDATE-PHOSPHATASE-RXN-CPD0-1422/WATER//CPD66-34/Pi.29.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-10662Ec-3.1.2Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-10727Myristoyl-acp hydrolase activityEc-3.1.2.14Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-11797(r)-3-hydroxydecanoyl-coa synthaseEc-2.4.1Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-11820-STEARIC ACID/HYDROGEN-PEROXIDE//R-2-HYDROXYSTEARATE/WATER.58.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-11976Torulene synthaseEc-2.5.1Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-12559Trans-2-hexenoyl-coa reductase (nad+)Ec-1.3.1.44Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-12777Ec-2.3.1Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling02
RXN-12971Ec-1.3.1.93Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling02
RXN-13279-CPD-14916/NADP//CPD0-2106/NADPH/PROTON.39.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13307Ec-1.3.1.93Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-13308Ec-1.3.1.93Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
RXN-137094-methylsterol monooxygenaseEc-1.14.18.9Manual
Gap-filling
Gapfilling solution with meneco draft medium
Reactions add sjap
Added for gapfilling
Curation sterols (girard et al.)
00
RXN-13709-4-METHYL-824-CHOLESTADIENOL/NADH/OXYGEN-MOLECULE/PROTON//CPD-4702/NAD/WATER.76.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13709-4-METHYL-824-CHOLESTADIENOL/NADPH/OXYGEN-MOLECULE/PROTON//CPD-4702/NADP/WATER.78.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13712Ec-1.14.18.9Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13712-44-DIMETHYL-824-CHOLESTADIENOL/NADH/OXYGEN-MOLECULE/PROTON//CPD-4577/NAD/WATER.79.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-13712-44-DIMETHYL-824-CHOLESTADIENOL/NADPH/OXYGEN-MOLECULE/PROTON//CPD-4577/NADP/WATER.81.Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-14037Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-14246Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling00
RXN-14275Ec-1.1.1.m19Gap-fillingGapfilling solution with meneco draft mediumAdded for gapfilling01
... further results