Difference between revisions of "Meneco"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7904 RXN-7904] == * direction: ** left-to-right * common-name: ** acyl-coa synthetase ** long-c...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLU6PDEHYDROG-RXN GLU6PDEHYDROG-RXN] == * direction: ** left-to-right * common-name: ** glucose-6-p...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7904 RXN-7904] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLU6PDEHYDROG-RXN GLU6PDEHYDROG-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** acyl-coa synthetase
+
** glucose-6-phosphate dehydrogenase (nadp+)
−
** long-chain fatty acid-coa ligase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/1.1.1.49 ec-1.1.1.49]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[Long-Chain-Fatty-Acids]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Long-Chain-Acyl-CoAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[D-glucopyranose-6-phosphate]][c] '''+''' 1 [[NADP]][c] '''=>''' 1 [[D-6-P-GLUCONO-DELTA-LACTONE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ11913]]
−
* Gene: [[SJ05591]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03650]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08691]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ08690]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ08692]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13972]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6803]], phosphatidylcholine acyl editing: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6803 PWY-6803]
+
* [[PWY-7268]], NAD/NADP-NADH/NADPH cytosolic interconversion (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7268 PWY-7268]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5885]], wax esters biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5885 PWY-5885]
+
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''16''' reactions found over '''18''' reactions in the full pathway
−
* [[PWY-5143]], long-chain fatty acid activation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5143 PWY-5143]
+
* [[GLYCOLYSIS-E-D]], superpathway of glycolysis and the Entner-Doudoroff pathway: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS-E-D GLYCOLYSIS-E-D]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''4''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6873]], long chain fatty acid ester synthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6873 PWY-6873]
+
* [[OXIDATIVEPENT-PWY]], pentose phosphate pathway (oxidative branch) I: [http://metacyc.org/META/NEW-IMAGE?object=OXIDATIVEPENT-PWY OXIDATIVEPENT-PWY]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7033]], alkane biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7033 PWY-7033]
+
* [[RUMP-PWY]], formaldehyde oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=RUMP-PWY RUMP-PWY]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15422 15422]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15842 15842]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02736 R02736]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O60135 O60135]
+
** [http://www.uniprot.org/uniprot/P11411 P11411]
−
** [http://www.uniprot.org/uniprot/Q9X7Z0 Q9X7Z0]
+
** [http://www.uniprot.org/uniprot/P12646 P12646]
−
** [http://www.uniprot.org/uniprot/Q9X7Y5 Q9X7Y5]
+
** [http://www.uniprot.org/uniprot/Q00612 Q00612]
−
** [http://www.uniprot.org/uniprot/Q9ZBW6 Q9ZBW6]
+
** [http://www.uniprot.org/uniprot/P54996 P54996]
−
** [http://www.uniprot.org/uniprot/Q9T0A0 Q9T0A0]
+
** [http://www.uniprot.org/uniprot/P21907 P21907]
−
** [http://www.uniprot.org/uniprot/Q9T009 Q9T009]
+
** [http://www.uniprot.org/uniprot/P54547 P54547]
−
** [http://www.uniprot.org/uniprot/Q96338 Q96338]
+
** [http://www.uniprot.org/uniprot/O51581 O51581]
−
** [http://www.uniprot.org/uniprot/Q96538 Q96538]
+
** [http://www.uniprot.org/uniprot/P0AC53 P0AC53]
−
** [http://www.uniprot.org/uniprot/Q96537 Q96537]
+
** [http://www.uniprot.org/uniprot/P11413 P11413]
−
** [http://www.uniprot.org/uniprot/O15840 O15840]
+
** [http://www.uniprot.org/uniprot/P29686 P29686]
−
** [http://www.uniprot.org/uniprot/O81614 O81614]
+
** [http://www.uniprot.org/uniprot/P44311 P44311]
−
** [http://www.uniprot.org/uniprot/P73004 P73004]
+
** [http://www.uniprot.org/uniprot/P56110 P56110]
−
** [http://www.uniprot.org/uniprot/P47912 P47912]
+
** [http://www.uniprot.org/uniprot/Q9JTW0 Q9JTW0]
−
** [http://www.uniprot.org/uniprot/Q8JZR0 Q8JZR0]
+
** [http://www.uniprot.org/uniprot/O25730 O25730]
−
** [http://www.uniprot.org/uniprot/P69452 P69452]
+
** [http://www.uniprot.org/uniprot/O51240 O51240]
−
** [http://www.uniprot.org/uniprot/P69451 P69451]
+
** [http://www.uniprot.org/uniprot/O66787 O66787]
−
** [http://www.uniprot.org/uniprot/Q02602 Q02602]
+
** [http://www.uniprot.org/uniprot/P05370 P05370]
−
** [http://www.uniprot.org/uniprot/P30624 P30624]
+
** [http://www.uniprot.org/uniprot/P11410 P11410]
−
** [http://www.uniprot.org/uniprot/P33124 P33124]
+
** [http://www.uniprot.org/uniprot/P11412 P11412]
−
** [http://www.uniprot.org/uniprot/P33121 P33121]
+
** [http://www.uniprot.org/uniprot/Q9R5T2 Q9R5T2]
−
** [http://www.uniprot.org/uniprot/Q9JYJ7 Q9JYJ7]
+
** [http://www.uniprot.org/uniprot/P48828 P48828]
−
** [http://www.uniprot.org/uniprot/O51539 O51539]
+
** [http://www.uniprot.org/uniprot/P37986 P37986]
−
** [http://www.uniprot.org/uniprot/O30039 O30039]
+
** [http://www.uniprot.org/uniprot/Q8IKU0 Q8IKU0]
−
** [http://www.uniprot.org/uniprot/P44446 P44446]
+
** [http://www.uniprot.org/uniprot/Q27741 Q27741]
−
** [http://www.uniprot.org/uniprot/Q9JTK0 Q9JTK0]
+
** [http://www.uniprot.org/uniprot/P48826 P48826]
−
** [http://www.uniprot.org/uniprot/Q9CHR0 Q9CHR0]
+
** [http://www.uniprot.org/uniprot/Q42919 Q42919]
−
** [http://www.uniprot.org/uniprot/Q9YCF0 Q9YCF0]
+
** [http://www.uniprot.org/uniprot/P37830 P37830]
−
** [http://www.uniprot.org/uniprot/P94547 P94547]
+
** [http://www.uniprot.org/uniprot/Q9FY99 Q9FY99]
−
** [http://www.uniprot.org/uniprot/Q9RTR4 Q9RTR4]
+
** [http://www.uniprot.org/uniprot/Q49700 Q49700]
−
** [http://www.uniprot.org/uniprot/O83181 O83181]
+
** [http://www.uniprot.org/uniprot/P73411 P73411]
−
** [http://www.uniprot.org/uniprot/Q10776 Q10776]
+
** [http://www.uniprot.org/uniprot/Q8L743 Q8L743]
−
** [http://www.uniprot.org/uniprot/Q9RYK3 Q9RYK3]
+
** [http://www.uniprot.org/uniprot/Q43793 Q43793]
−
** [http://www.uniprot.org/uniprot/P39002 P39002]
+
** [http://www.uniprot.org/uniprot/O65856 O65856]
−
** [http://www.uniprot.org/uniprot/O51162 O51162]
+
** [http://www.uniprot.org/uniprot/Q43839 Q43839]
−
** [http://www.uniprot.org/uniprot/P39518 P39518]
+
** [http://www.uniprot.org/uniprot/O81978 O81978]
−
** [http://www.uniprot.org/uniprot/P18163 P18163]
+
** [http://www.uniprot.org/uniprot/O24357 O24357]
−
* PIR:
+
** [http://www.uniprot.org/uniprot/O24358 O24358]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A36275 A36275]
+
** [http://www.uniprot.org/uniprot/O24359 O24359]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54901 A54901]
+
** [http://www.uniprot.org/uniprot/O22404 O22404]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A70117 A70117]
+
** [http://www.uniprot.org/uniprot/O22405 O22405]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54901 B54901]
+
** [http://www.uniprot.org/uniprot/O22406 O22406]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B75585 B75585]
+
** [http://www.uniprot.org/uniprot/Q9FJI5 Q9FJI5]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C70762 C70762]
+
** [http://www.uniprot.org/uniprot/Q9LK23 Q9LK23]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C71361 C71361]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C75364 C75364]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D69649 D69649]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D72605 D72605]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86707 F86707]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81798 G81798]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64041 H64041]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H69274 H69274]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70173 H70173]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81068 H81068]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JE0262 JE0262]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0202 JX0202]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0205 JX0205]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23052 S23052]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23467 S23467]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41589 S41589]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49487 S49487]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56060 S56060]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74984 S74984]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T01875 T01875]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02834 T02834]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07928 T07928]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07929 T07929]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07944 T07944]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08182 T08182]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08904 T08904]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T34994 T34994]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35430 T35430]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35513 T35513]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39766 T39766]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00390 R00390]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=long-chain fatty acid-coa ligase|acyl-coa synthetase}}
+
{{#set: common-name=glucose-6-phosphate dehydrogenase (nadp+)}}
−
{{#set: ec-number=ec-6.2.1.3}}
+
{{#set: ec-number=ec-1.1.1.49}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=5}}
 
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction GLU6PDEHYDROG-RXN

  • direction:
    • left-to-right
  • common-name:
    • glucose-6-phosphate dehydrogenase (nadp+)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7268, NAD/NADP-NADH/NADPH cytosolic interconversion (yeast): PWY-7268
    • 4 reactions found over 5 reactions in the full pathway
  • P122-PWY, heterolactic fermentation: P122-PWY
    • 16 reactions found over 18 reactions in the full pathway
  • GLYCOLYSIS-E-D, superpathway of glycolysis and the Entner-Doudoroff pathway: GLYCOLYSIS-E-D
    • 4 reactions found over 2 reactions in the full pathway
  • OXIDATIVEPENT-PWY, pentose phosphate pathway (oxidative branch) I: OXIDATIVEPENT-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • RUMP-PWY, formaldehyde oxidation I: RUMP-PWY
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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