Difference between revisions of "Meneco"

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(Created page with "Category:reaction == Reaction RXN0-1321 == * direction: ** left-to-right * common-name: ** trna-guanine transglycosylase * ec-number: ** [http://enzyme.expasy.org/EC/2.4.2...")
(Created page with "Category:reaction == Reaction AIRS-RXN == * direction: ** left-to-right * common-name: ** phosphoribosylformylglycinamide cyclo-ligase * ec-number: ** [http://enzyme.expas...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-1321 ==
+
== Reaction AIRS-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** trna-guanine transglycosylase
+
** phosphoribosylformylglycinamide cyclo-ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.2.29 ec-2.4.2.29]
+
** [http://enzyme.expasy.org/EC/6.3.3.1 ec-6.3.3.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[7-AMINOMETHYL-7-DEAZAGUANINE]][c] '''+''' 1 [[Guanine34-in-tRNAs]][c] '''=>''' 1 [[GUANINE]][c] '''+''' 1 [[tRNA-with-7-aminomethyl-7-deazaguanine]][c]
+
* 1 [[5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12245]]
+
* Gene: [[SJ06408]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6700]], queuosine biosynthesis I (de novo):
+
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''6''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II:
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24105 24105]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23033 23033]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R10209 R10209]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04208 R04208]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P07244 P07244]
 +
** [http://www.uniprot.org/uniprot/P12043 P12043]
 +
** [http://www.uniprot.org/uniprot/P21872 P21872]
 +
** [http://www.uniprot.org/uniprot/P08178 P08178]
 +
** [http://www.uniprot.org/uniprot/P00967 P00967]
 +
** [http://www.uniprot.org/uniprot/P16340 P16340]
 +
** [http://www.uniprot.org/uniprot/P22102 P22102]
 +
** [http://www.uniprot.org/uniprot/Q57656 Q57656]
 +
** [http://www.uniprot.org/uniprot/O66968 O66968]
 +
** [http://www.uniprot.org/uniprot/Q9JUA2 Q9JUA2]
 +
** [http://www.uniprot.org/uniprot/P43848 P43848]
 +
** [http://www.uniprot.org/uniprot/Q9PME0 Q9PME0]
 +
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
 +
** [http://www.uniprot.org/uniprot/P20772 P20772]
 +
** [http://www.uniprot.org/uniprot/Q55422 Q55422]
 +
** [http://www.uniprot.org/uniprot/P52424 P52424]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=trna-guanine transglycosylase}}
+
{{#set: common-name=phosphoribosylformylglycinamide cyclo-ligase}}
−
{{#set: ec-number=ec-2.4.2.29}}
+
{{#set: ec-number=ec-6.3.3.1}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:00, 5 January 2021

Reaction AIRS-RXN

  • direction:
    • left-to-right
  • common-name:
    • phosphoribosylformylglycinamide cyclo-ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
    • 6 reactions found over 5 reactions in the full pathway
  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II:
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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