Difference between revisions of "N-CARBAMOYLPUTRESCINE-AMIDASE-RXN"

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(Created page with "Category:reaction == Reaction 6.3.2.25-RXN == * direction: ** left-to-right * common-name: ** tubulin-tyrosine ligase * ec-number: ** [http://enzyme.expasy.org/EC/6.3.2.25...")
(Created page with "Category:reaction == Reaction DTDPDEHYDRHAMEPIM-RXN == * direction: ** left-to-right * common-name: ** dtdp-4-dehydrorhamnose 3,5-epimerase * ec-number: ** [http://enzyme....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 6.3.2.25-RXN ==
+
== Reaction DTDPDEHYDRHAMEPIM-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** tubulin-tyrosine ligase
+
** dtdp-4-dehydrorhamnose 3,5-epimerase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.2.25 ec-6.3.2.25]
+
** [http://enzyme.expasy.org/EC/5.1.3.13 ec-5.1.3.13]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[Detyrosinated-alpha--tubulins]][c] '''+''' 1 [[TYR]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[Alpha-tubulins]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c] '''=>''' 1 [[DTDP-DEOH-DEOXY-MANNOSE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ22556]]
−
* Gene: [[SJ19915]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08327]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ19490]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06727]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07175]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03083]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ19648]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18654]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16360]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21563]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ22079]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00218]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03297]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7301]], dTDP-4-O-demethyl-&beta;-L-noviose biosynthesis:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7814]], dTDP-L-daunosamine biosynthesis:
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16969 16969]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04730 R04730]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06514 R06514]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P38160 P38160]
+
** [http://www.uniprot.org/uniprot/Q9JWX1 Q9JWX1]
 +
** [http://www.uniprot.org/uniprot/Q9JWW7 Q9JWW7]
 +
** [http://www.uniprot.org/uniprot/Q9UZG9 Q9UZG9]
 +
** [http://www.uniprot.org/uniprot/P37745 P37745]
 +
** [http://www.uniprot.org/uniprot/Q7M0V5 Q7M0V5]
 +
** [http://www.uniprot.org/uniprot/P37763 P37763]
 +
** [http://www.uniprot.org/uniprot/Q46770 Q46770]
 +
** [http://www.uniprot.org/uniprot/P29783 P29783]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=tubulin-tyrosine ligase}}
+
{{#set: common-name=dtdp-4-dehydrorhamnose 3,5-epimerase}}
−
{{#set: ec-number=ec-6.3.2.25}}
+
{{#set: ec-number=ec-5.1.3.13}}
−
{{#set: nb gene associated=13}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:21, 15 January 2021

Reaction DTDPDEHYDRHAMEPIM-RXN

  • direction:
    • left-to-right
  • common-name:
    • dtdp-4-dehydrorhamnose 3,5-epimerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • DTDPRHAMSYN-PWY, dTDP-L-rhamnose biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7301, dTDP-4-O-demethyl-β-L-noviose biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7814, dTDP-L-daunosamine biosynthesis:
    • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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