Difference between revisions of "N-methyl-terminal-XPK"

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(Created page with "Category:gene == Gene SJ18758 == == Organism(s) associated with this gene == * S.japonica_carotenoid_curated == Reaction(s) associated == * 4.2.2.10-RXN ** Catego...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-LIGASE-ATP-RXN DNA-LIGASE-ATP-RXN] == * direction: ** left-to-right * common-name: ** dna ligas...")
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[[Category:gene]]
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[[Category:reaction]]
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== Gene SJ18758 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-LIGASE-ATP-RXN DNA-LIGASE-ATP-RXN] ==
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== Organism(s) associated with this gene  ==
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* direction:
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* [[S.japonica_carotenoid_curated]]
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** left-to-right
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== Reaction(s) associated ==
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* common-name:
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* [[4.2.2.10-RXN]]
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** dna ligase (atp)
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* ec-number:
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** [http://enzyme.expasy.org/EC/6.5.1.7 ec-6.5.1.7]
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** [http://enzyme.expasy.org/EC/6.5.1.1 ec-6.5.1.1]
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** [http://enzyme.expasy.org/EC/6.5.1.6 ec-6.5.1.6]
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== Reaction formula ==
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* 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DNA-N]][c] '''+''' 1 [[PPI]][c]
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== Gene(s) associated with this reaction  ==
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* Gene: [[SJ13521]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ15543]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[RXN-14897]]
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* Gene: [[SJ16080]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Pathway(s) associated ==
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== Pathway(s)  ==
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* [[PWY-7243]]
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== Reconstruction information  ==
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** '''1''' reactions found over '''n.a''' reactions in the full pathway
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: nb reaction associated=2}}
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== External links  ==
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{{#set: nb pathway associated=1}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00381 R00381]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P12000 P12000]
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** [http://www.uniprot.org/uniprot/P18858 P18858]
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** [http://www.uniprot.org/uniprot/P35970 P35970]
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** [http://www.uniprot.org/uniprot/Q9QNG8 Q9QNG8]
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** [http://www.uniprot.org/uniprot/Q9PM08 Q9PM08]
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** [http://www.uniprot.org/uniprot/Q57635 Q57635]
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** [http://www.uniprot.org/uniprot/P49917 P49917]
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** [http://www.uniprot.org/uniprot/P49916 P49916]
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** [http://www.uniprot.org/uniprot/P37913 P37913]
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** [http://www.uniprot.org/uniprot/P51892 P51892]
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** [http://www.uniprot.org/uniprot/P16272 P16272]
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** [http://www.uniprot.org/uniprot/P33798 P33798]
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** [http://www.uniprot.org/uniprot/P00970 P00970]
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** [http://www.uniprot.org/uniprot/P00969 P00969]
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** [http://www.uniprot.org/uniprot/P04819 P04819]
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** [http://www.uniprot.org/uniprot/P19088 P19088]
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** [http://www.uniprot.org/uniprot/P07717 P07717]
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** [http://www.uniprot.org/uniprot/P26813 P26813]
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** [http://www.uniprot.org/uniprot/Q02093 Q02093]
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** [http://www.uniprot.org/uniprot/Q23694 Q23694]
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** [http://www.uniprot.org/uniprot/Q67480 Q67480]
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** [http://www.uniprot.org/uniprot/Q42572 Q42572]
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** [http://www.uniprot.org/uniprot/P20492 P20492]
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</div>
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{{#set: direction=left-to-right}}
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{{#set: common-name=dna ligase (atp)}}
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{{#set: ec-number=ec-6.5.1.1|ec-6.5.1.7|ec-6.5.1.6}}
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{{#set: nb gene associated=3}}
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{{#set: nb pathway associated=0}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:28, 27 August 2019

Reaction DNA-LIGASE-ATP-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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