Difference between revisions of "NAD-KIN-RXN"

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(Created page with "Category:reaction == Reaction GLUCISOM-RXN-ALPHA-GLUCOSE//CPD-15382.25. == * direction: ** reversible == Reaction formula == * 1.0 ALPHA-GLUCOSE[c] '''<=>''' 1.0 CPD...")
(Created page with "Category:reaction == Reaction R223-RXN == * direction: ** left-to-right * common-name: ** octanoyl-coa ligase ** acyl-coa synthetase ** long-chain fatty acid-coa ligase *...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUCISOM-RXN-ALPHA-GLUCOSE//CPD-15382.25. ==
+
== Reaction R223-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** octanoyl-coa ligase
 +
** acyl-coa synthetase
 +
** long-chain fatty acid-coa ligase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[ALPHA-GLUCOSE]][c] '''<=>''' 1.0 [[CPD-15382]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-195]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CPD-196]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ08690]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08692]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05591]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03650]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13972]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08691]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered):
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[P221-PWY]], octane oxidation:
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=0}}
+
{{#set: common-name=long-chain fatty acid-coa ligase|octanoyl-coa ligase|acyl-coa synthetase}}
−
{{#set: nb pathway associated=0}}
+
{{#set: ec-number=ec-6.2.1.3}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: nb gene associated=6}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:32, 5 January 2021

Reaction R223-RXN

  • direction:
    • left-to-right
  • common-name:
    • octanoyl-coa ligase
    • acyl-coa synthetase
    • long-chain fatty acid-coa ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6920, 6-gingerol analog biosynthesis (engineered):
    • 5 reactions found over 6 reactions in the full pathway
  • P221-PWY, octane oxidation:
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=NAD-KIN-RXN&oldid=75606"