Difference between revisions of "NAD-SYNTH-GLN-RXN"

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(Created page with "Category:reaction == Reaction RXN-9533 == * direction: ** left-to-right * common-name: ** fatty acid synthase ** (3r)-3-hydroxydodecanoyl-[acyl-carrier protein] dehydratas...")
(Created page with "Category:reaction == Reaction NAD-SYNTH-GLN-RXN == * direction: ** left-to-right * common-name: ** nad+ synthetase, glutamine dependent * ec-number: ** [http://enzyme.expa...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9533 ==
+
== Reaction NAD-SYNTH-GLN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** fatty acid synthase
+
** nad+ synthetase, glutamine dependent
−
** (3r)-3-hydroxydodecanoyl-[acyl-carrier protein] dehydratase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/6.3.5.1 ec-6.3.5.1]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[R-3-hydroxydodecanoyl-ACPs]][c] '''=>''' 1 [[Dodec-2-enoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[DEAMIDO-NAD]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ20196]]
−
* Gene: [[SJ10275]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ19629]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15983]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18059]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11672]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10624]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00613]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00320]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03883]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06944]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06617]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06616]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04769]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04443]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17743]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13014]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7664]], oleate biosynthesis IV (anaerobic):
+
* [[PWY-7761]], NAD salvage pathway II (PNC IV cycle):
−
** '''13''' reactions found over '''14''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plant cytoplasm):
+
* [[PWY-5653]], NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde:
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5994]], palmitate biosynthesis (animals and fungi, cytoplasm):
+
* [[PYRIDNUCSAL-PWY]], NAD salvage pathway I (PNC VI cycle):
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PYRIDNUCSYN-PWY]], NAD de novo biosynthesis I (from aspartate):
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5381]], NAD salvage (plants):
 +
** '''6''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR97678
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24385 24385]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00257 R00257]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9PPB0 Q9PPB0]
 +
** [http://www.uniprot.org/uniprot/Q9JTY7 Q9JTY7]
 +
** [http://www.uniprot.org/uniprot/Q9CGJ4 Q9CGJ4]
 +
** [http://www.uniprot.org/uniprot/Q9Z4V9 Q9Z4V9]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=(3r)-3-hydroxydodecanoyl-[acyl-carrier protein] dehydratase|fatty acid synthase}}
+
{{#set: common-name=nad+ synthetase, glutamine dependent}}
−
{{#set: ec-number=ec-2.3.1.86|ec-2.3.1.85|ec-4.2.1.59}}
+
{{#set: ec-number=ec-6.3.5.1}}
−
{{#set: nb gene associated=16}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction NAD-SYNTH-GLN-RXN

  • direction:
    • left-to-right
  • common-name:
    • nad+ synthetase, glutamine dependent
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7761, NAD salvage pathway II (PNC IV cycle):
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-5653, NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde:
    • 3 reactions found over 4 reactions in the full pathway
  • PYRIDNUCSAL-PWY, NAD salvage pathway I (PNC VI cycle):
    • 4 reactions found over 7 reactions in the full pathway
  • PYRIDNUCSYN-PWY, NAD de novo biosynthesis I (from aspartate):
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-5381, NAD salvage (plants):
    • 6 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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