Difference between revisions of "NADH-DEHYDROGENASE-RXN"
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(Created page with "Category:reaction == Reaction AKGDHe2r == * direction: ** reversible * common-name: ** 2-oxoglutarate dehydrogenase e2 component == Reaction formula == * 1.0 CO-A[m] '...") |
(Created page with "Category:reaction == Reaction TRIOSEPISOMERIZATION-RXN == * direction: ** reversible * common-name: ** triosephosphate isomerase ** triose-phosphate isomerase * ec-number:...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction TRIOSEPISOMERIZATION-RXN == |
* direction: | * direction: | ||
** reversible | ** reversible | ||
* common-name: | * common-name: | ||
− | ** | + | ** triosephosphate isomerase |
+ | ** triose-phosphate isomerase | ||
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/5.3.1.1 ec-5.3.1.1] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 | + | * 1 [[GAP]][c] '''<=>''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * Gene: [[SJ10351]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ11011]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ15388]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ07665]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ21027]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * [[GLUCONEO-PWY]], gluconeogenesis I: | ||
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: | ||
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-5484]], glycolysis II (from fructose 6-phosphate): | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-1042]], glycolysis IV (plant cytosol): | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[P341-PWY]], glycolysis V (Pyrococcus): | ||
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY66-399]], gluconeogenesis III: | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): | ||
+ | ** '''10''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY66-373]], sucrose degradation V (sucrose α-glucosidase): | ||
+ | ** '''3''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7003]], glycerol degradation to butanol: | ||
+ | ** '''8''' reactions found over '''6''' reactions in the full pathway | ||
+ | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18588 18588] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01015 R01015] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P19118 P19118] | ||
+ | ** [http://www.uniprot.org/uniprot/P21820 P21820] | ||
+ | ** [http://www.uniprot.org/uniprot/P48501 P48501] | ||
+ | ** [http://www.uniprot.org/uniprot/P62002 P62002] | ||
+ | ** [http://www.uniprot.org/uniprot/O27120 O27120] | ||
+ | ** [http://www.uniprot.org/uniprot/P27876 P27876] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PMQ6 Q9PMQ6] | ||
+ | ** [http://www.uniprot.org/uniprot/P19583 P19583] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9UXX2 Q9UXX2] | ||
+ | ** [http://www.uniprot.org/uniprot/P47721 P47721] | ||
+ | ** [http://www.uniprot.org/uniprot/P47670 P47670] | ||
+ | ** [http://www.uniprot.org/uniprot/P50918 P50918] | ||
+ | ** [http://www.uniprot.org/uniprot/P43727 P43727] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58923 Q58923] | ||
+ | ** [http://www.uniprot.org/uniprot/O28965 O28965] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59182 Q59182] | ||
+ | ** [http://www.uniprot.org/uniprot/O59536 O59536] | ||
+ | ** [http://www.uniprot.org/uniprot/P36204 P36204] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JW31 Q9JW31] | ||
+ | ** [http://www.uniprot.org/uniprot/P04828 P04828] | ||
+ | ** [http://www.uniprot.org/uniprot/P00943 P00943] | ||
+ | ** [http://www.uniprot.org/uniprot/P00942 P00942] | ||
+ | ** [http://www.uniprot.org/uniprot/P00940 P00940] | ||
+ | ** [http://www.uniprot.org/uniprot/P60175 P60175] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A858 P0A858] | ||
+ | ** [http://www.uniprot.org/uniprot/P60174 P60174] | ||
+ | ** [http://www.uniprot.org/uniprot/P00941 P00941] | ||
+ | ** [http://www.uniprot.org/uniprot/P15426 P15426] | ||
+ | ** [http://www.uniprot.org/uniprot/P17751 P17751] | ||
+ | ** [http://www.uniprot.org/uniprot/P00939 P00939] | ||
+ | ** [http://www.uniprot.org/uniprot/P12863 P12863] | ||
+ | ** [http://www.uniprot.org/uniprot/P07669 P07669] | ||
+ | ** [http://www.uniprot.org/uniprot/P35144 P35144] | ||
+ | ** [http://www.uniprot.org/uniprot/P48494 P48494] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M4X7 Q7M4X7] | ||
+ | ** [http://www.uniprot.org/uniprot/P29613 P29613] | ||
+ | ** [http://www.uniprot.org/uniprot/P30741 P30741] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01893 Q01893] | ||
+ | ** [http://www.uniprot.org/uniprot/P48499 P48499] | ||
+ | ** [http://www.uniprot.org/uniprot/P48496 P48496] | ||
+ | ** [http://www.uniprot.org/uniprot/P46226 P46226] | ||
+ | ** [http://www.uniprot.org/uniprot/P46225 P46225] | ||
+ | ** [http://www.uniprot.org/uniprot/P48492 P48492] | ||
+ | ** [http://www.uniprot.org/uniprot/Q56738 Q56738] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7LZE5 Q7LZE5] | ||
+ | ** [http://www.uniprot.org/uniprot/P46711 P46711] | ||
+ | ** [http://www.uniprot.org/uniprot/O32757 O32757] | ||
+ | ** [http://www.uniprot.org/uniprot/O74067 O74067] | ||
+ | ** [http://www.uniprot.org/uniprot/P48491 P48491] | ||
+ | </div> | ||
{{#set: direction=reversible}} | {{#set: direction=reversible}} | ||
− | {{#set: common-name= | + | {{#set: common-name=triose-phosphate isomerase|triosephosphate isomerase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-5.3.1.1}} |
− | {{#set: nb pathway associated= | + | {{#set: nb gene associated=5}} |
− | {{#set: reconstruction category=orthology}} | + | {{#set: nb pathway associated=12}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction category=annotation|orthology}} |
+ | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:08, 5 January 2021
Contents
Reaction TRIOSEPISOMERIZATION-RXN
- direction:
- reversible
- common-name:
- triosephosphate isomerase
- triose-phosphate isomerase
- ec-number:
Reaction formula
- 1 GAP[c] <=> 1 DIHYDROXY-ACETONE-PHOSPHATE[c]
Gene(s) associated with this reaction
- Gene: SJ10351
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ11011
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ15388
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ07665
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ21027
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- GLUCONEO-PWY, gluconeogenesis I:
- 12 reactions found over 13 reactions in the full pathway
- CALVIN-PWY, Calvin-Benson-Bassham cycle:
- 12 reactions found over 13 reactions in the full pathway
- P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
- 11 reactions found over 12 reactions in the full pathway
- PWY-5484, glycolysis II (from fructose 6-phosphate):
- 10 reactions found over 11 reactions in the full pathway
- PWY-1042, glycolysis IV (plant cytosol):
- 9 reactions found over 10 reactions in the full pathway
- P341-PWY, glycolysis V (Pyrococcus):
- 6 reactions found over 10 reactions in the full pathway
- GLYCOLYSIS, glycolysis I (from glucose 6-phosphate):
- 11 reactions found over 12 reactions in the full pathway
- ANAGLYCOLYSIS-PWY, glycolysis III (from glucose):
- 10 reactions found over 11 reactions in the full pathway
- PWY66-399, gluconeogenesis III:
- 11 reactions found over 12 reactions in the full pathway
- PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum):
- 10 reactions found over 13 reactions in the full pathway
- PWY66-373, sucrose degradation V (sucrose α-glucosidase):
- 3 reactions found over 5 reactions in the full pathway
- PWY-7003, glycerol degradation to butanol:
- 8 reactions found over 6 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
- P19118
- P21820
- P48501
- P62002
- O27120
- P27876
- Q9PMQ6
- P19583
- Q9UXX2
- P47721
- P47670
- P50918
- P43727
- Q58923
- O28965
- Q59182
- O59536
- P36204
- Q9JW31
- P04828
- P00943
- P00942
- P00940
- P60175
- P0A858
- P60174
- P00941
- P15426
- P17751
- P00939
- P12863
- P07669
- P35144
- P48494
- Q7M4X7
- P29613
- P30741
- Q01893
- P48499
- P48496
- P46226
- P46225
- P48492
- Q56738
- Q7LZE5
- P46711
- O32757
- O74067
- P48491