Difference between revisions of "NADPYROPHOSPHAT-RXN"

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(Created page with "Category:reaction == Reaction AMP-DEAMINASE-RXN == * direction: ** left-to-right * common-name: ** amp deaminase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.4.17 ec-3...")
(Created page with "Category:reaction == Reaction TYROSINE-DECARBOXYLASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.25 ec-4.1.1.25] == Reaction fo...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction AMP-DEAMINASE-RXN ==
+
== Reaction TYROSINE-DECARBOXYLASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** amp deaminase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.4.17 ec-3.5.4.17]
+
** [http://enzyme.expasy.org/EC/4.1.1.25 ec-4.1.1.25]
−
** [http://enzyme.expasy.org/EC/3.5.4.6 ec-3.5.4.6]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[IMP]][c]
+
* 1 [[PROTON]][c] '''+''' 1 [[TYR]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[TYRAMINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10996]]
+
* Gene: [[SJ11952]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15115]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6596]], adenosine nucleotides degradation I:
+
* [[PWY-6133]], (S)-reticuline biosynthesis II:
−
** '''7''' reactions found over '''8''' reactions in the full pathway
+
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7297]], octopamine biosynthesis:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5254]], methanofuran biosynthesis:
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6802]], salidroside biosynthesis:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7826]], Amaryllidacea alkaloids biosynthesis:
 +
** '''2''' reactions found over '''25''' reactions in the full pathway
 +
* [[PWY-5474]], hydroxycinnamic acid tyramine amides biosynthesis:
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-3581]], (S)-reticuline biosynthesis I:
 +
** '''6''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14778 14778]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14346 14346]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00181 R00181]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00736 R00736]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P10759 P10759]
+
** [http://www.uniprot.org/uniprot/Q06086 Q06086]
−
** [http://www.uniprot.org/uniprot/Q02356 Q02356]
+
** [http://www.uniprot.org/uniprot/P54768 P54768]
−
** [http://www.uniprot.org/uniprot/P23109 P23109]
+
** [http://www.uniprot.org/uniprot/P54769 P54769]
−
** [http://www.uniprot.org/uniprot/P15274 P15274]
+
** [http://www.uniprot.org/uniprot/P54770 P54770]
−
** [http://www.uniprot.org/uniprot/Q7M3H8 Q7M3H8]
+
** [http://www.uniprot.org/uniprot/O82417 O82417]
−
** [http://www.uniprot.org/uniprot/Q01433 Q01433]
+
** [http://www.uniprot.org/uniprot/P54771 P54771]
−
** [http://www.uniprot.org/uniprot/Q01432 Q01432]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=amp deaminase}}
+
{{#set: ec-number=ec-4.1.1.25}}
−
{{#set: ec-number=ec-3.5.4.17|ec-3.5.4.6}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=7}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:17, 14 January 2021

Reaction TYROSINE-DECARBOXYLASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6133, (S)-reticuline biosynthesis II:
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-7297, octopamine biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5254, methanofuran biosynthesis:
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6802, salidroside biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7826, Amaryllidacea alkaloids biosynthesis:
    • 2 reactions found over 25 reactions in the full pathway
  • PWY-5474, hydroxycinnamic acid tyramine amides biosynthesis:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-3581, (S)-reticuline biosynthesis I:
    • 6 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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