Difference between revisions of "NICONUCADENYLYLTRAN-RXN"
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(Created page with "Category:reaction == Reaction RXN-12590 == * direction: ** left-to-right * common-name: ** pyridoxal 5′-phosphate synthase (glutamine hydrolyzing) ** pyridoxal 5'-ph...") |
(Created page with "Category:reaction == Reaction RIB5PISOM-RXN == * direction: ** reversible * common-name: ** ribose-5-phosphate isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.3.1...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction RIB5PISOM-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** ribose-5-phosphate isomerase |
− | * | + | * ec-number: |
− | + | ** [http://enzyme.expasy.org/EC/5.3.1.6 ec-5.3.1.6] | |
− | ** | ||
== Reaction formula == | == Reaction formula == | ||
− | * | + | * 1 [[RIBOSE-5P]][c] '''<=>''' 1 [[RIBULOSE-5P]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ00411]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ07743]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[P124-PWY]], Bifidobacterium shunt: | ||
+ | ** '''12''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-5723]], Rubisco shunt: | ||
+ | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: | ||
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle): | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14660 14660] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01056 R01056] |
− | * | + | * UNIPROT: |
− | ** [http://www. | + | ** [http://www.uniprot.org/uniprot/P0A7Z0 P0A7Z0] |
− | {{#set: direction= | + | ** [http://www.uniprot.org/uniprot/Q9CDI7 Q9CDI7] |
− | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/P44725 P44725] |
− | {{#set: | + | ** [http://www.uniprot.org/uniprot/Q58998 Q58998] |
+ | ** [http://www.uniprot.org/uniprot/Q9JTM5 Q9JTM5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PP08 Q9PP08] | ||
+ | ** [http://www.uniprot.org/uniprot/P37351 P37351] | ||
+ | ** [http://www.uniprot.org/uniprot/P74234 P74234] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55766 Q55766] | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=ribose-5-phosphate isomerase}} | ||
+ | {{#set: ec-number=ec-5.3.1.6}} | ||
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=6}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:24, 15 January 2021
Contents
Reaction RIB5PISOM-RXN
- direction:
- reversible
- common-name:
- ribose-5-phosphate isomerase
- ec-number:
Reaction formula
- 1 RIBOSE-5P[c] <=> 1 RIBULOSE-5P[c]
Gene(s) associated with this reaction
- Gene: SJ00411
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ07743
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- P124-PWY, Bifidobacterium shunt:
- 12 reactions found over 15 reactions in the full pathway
- P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
- 11 reactions found over 12 reactions in the full pathway
- NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch):
- 5 reactions found over 5 reactions in the full pathway
- PWY-5723, Rubisco shunt:
- 10 reactions found over 10 reactions in the full pathway
- CALVIN-PWY, Calvin-Benson-Bassham cycle:
- 12 reactions found over 13 reactions in the full pathway
- PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
- 7 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: