Difference between revisions of "NO3t"

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(Created page with "Category:reaction == Reaction ALGINATE-SYNTHASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.4.1.33 ec-2.4.1.33] == Reaction formula...")
(Created page with "Category:reaction == Reaction AIRCARBOXY-RXN == * direction: ** reversible * common-name: ** phosphoribosylaminoimidazole carboxylase * ec-number: ** [http://enzyme.expasy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ALGINATE-SYNTHASE-RXN ==
+
== Reaction AIRCARBOXY-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** phosphoribosylaminoimidazole carboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.1.33 ec-2.4.1.33]
+
** [http://enzyme.expasy.org/EC/4.1.1.21 ec-4.1.1.21]
 
== Reaction formula ==
 
== Reaction formula ==
−
* n [[CPD-1828]][c] '''=>''' n [[GDP]][c] '''+''' n [[PROTON]][c] '''+''' 1 [[Poly-beta-D-Mannuronate]][c]
+
* 1 [[PHOSPHORIBOSYL-CARBOXY-AMINOIMIDAZOLE]][c] '''+''' 2 [[PROTON]][c] '''<=>''' 1 [[5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ18574]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ11301]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6082]], alginate biosynthesis II (bacterial):
+
* [[PWY-6124]], inosine-5'-phosphate biosynthesis II:
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6073]], alginate biosynthesis I (algal):
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR108735
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10794 10794]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03129 R03129]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04209 R04209]
−
{{#set: direction=left-to-right}}
+
* UNIPROT:
−
{{#set: ec-number=ec-2.4.1.33}}
+
** [http://www.uniprot.org/uniprot/Q9RYC6 Q9RYC6]
−
{{#set: nb gene associated=0}}
+
** [http://www.uniprot.org/uniprot/Q9PPK5 Q9PPK5]
−
{{#set: nb pathway associated=2}}
+
** [http://www.uniprot.org/uniprot/O66608 O66608]
−
{{#set: reconstruction category=gap-filling}}
+
** [http://www.uniprot.org/uniprot/O67239 O67239]
−
{{#set: reconstruction tool=meneco}}
+
** [http://www.uniprot.org/uniprot/P12045 P12045]
−
{{#set: reconstruction comment=added for gapfilling}}
+
** [http://www.uniprot.org/uniprot/P09029 P09029]
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
** [http://www.uniprot.org/uniprot/P12044 P12044]
 +
** [http://www.uniprot.org/uniprot/P21264 P21264]
 +
** [http://www.uniprot.org/uniprot/P0AG18 P0AG18]
 +
** [http://www.uniprot.org/uniprot/P15567 P15567]
 +
** [http://www.uniprot.org/uniprot/Q9XAY8 Q9XAY8]
 +
** [http://www.uniprot.org/uniprot/P43849 P43849]
 +
** [http://www.uniprot.org/uniprot/Q9JTS6 Q9JTS6]
 +
** [http://www.uniprot.org/uniprot/P43850 P43850]
 +
** [http://www.uniprot.org/uniprot/Q58033 Q58033]
 +
** [http://www.uniprot.org/uniprot/Q9WYS8 Q9WYS8]
 +
** [http://www.uniprot.org/uniprot/P22234 P22234]
 +
** [http://www.uniprot.org/uniprot/P22348 P22348]
 +
** [http://www.uniprot.org/uniprot/Q01930 Q01930]
 +
** [http://www.uniprot.org/uniprot/P55195 P55195]
 +
** [http://www.uniprot.org/uniprot/P50504 P50504]
 +
** [http://www.uniprot.org/uniprot/Q55498 Q55498]
 +
** [http://www.uniprot.org/uniprot/P74724 P74724]
 +
** [http://www.uniprot.org/uniprot/O80937 O80937]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=phosphoribosylaminoimidazole carboxylase}}
 +
{{#set: ec-number=ec-4.1.1.21}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:33, 15 March 2021

Reaction AIRCARBOXY-RXN

  • direction:
    • reversible
  • common-name:
    • phosphoribosylaminoimidazole carboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6124, inosine-5'-phosphate biosynthesis II:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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