Difference between revisions of "NODOx"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN-11919 == * direction: ** left-to-right * common-name: ** (2e)-5-methylhexa-2,4-dienoyl-coa hydratase * ec-number: ** [http://enzyme.expas...")
(Created page with "Category:reaction == Reaction HOMOSERINE-O-ACETYLTRANSFERASE-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.31 ec-2.3.1.31] == Reacti...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-11919 ==
+
== Reaction HOMOSERINE-O-ACETYLTRANSFERASE-RXN ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
* common-name:
 
** (2e)-5-methylhexa-2,4-dienoyl-coa hydratase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/4.2.1 ec-4.2.1]
+
** [http://enzyme.expasy.org/EC/2.3.1.31 ec-2.3.1.31]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[CPD-12904]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-12905]][c]
+
* 1 [[ACETYL-COA]][c] '''+''' 1 [[HOMO-SER]][c] '''<=>''' 1 [[CO-A]][c] '''+''' 1 [[CPD-667]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ03913]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6672]], cis-genanyl-CoA degradation:
+
* [[PWY-5344]], L-homocysteine biosynthesis:
** '''4''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13704 13704]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R08093 R08093]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01776 R01776]
{{#set: direction=left-to-right}}
+
* UNIPROT:
{{#set: common-name=(2e)-5-methylhexa-2,4-dienoyl-coa hydratase}}
+
** [http://www.uniprot.org/uniprot/P08465 P08465]
{{#set: ec-number=ec-4.2.1}}
+
** [http://www.uniprot.org/uniprot/O60062 O60062]
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/P94891 P94891]
 +
** [http://www.uniprot.org/uniprot/P12917 P12917]
 +
{{#set: direction=reversible}}
 +
{{#set: ec-number=ec-2.3.1.31}}
 +
{{#set: nb gene associated=0}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=gap-filling}}
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=meneco}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=added for gapfilling}}
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}

Revision as of 19:04, 14 January 2021

Reaction HOMOSERINE-O-ACETYLTRANSFERASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5344, L-homocysteine biosynthesis:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links