Difference between revisions of "NODOx"

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(Created page with "Category:reaction == Reaction RXN-14140 == * direction: ** left-to-right * common-name: ** nucleotide diphosphatase * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.9 ec...")
(Created page with "Category:reaction == Reaction DNA-LIGASE-ATP-RXN == * direction: ** left-to-right * common-name: ** dna ligase (atp) * ec-number: ** [http://enzyme.expasy.org/EC/6.5.1.7 e...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-14140 ==
+
== Reaction DNA-LIGASE-ATP-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** nucleotide diphosphatase
+
** dna ligase (atp)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9]
+
** [http://enzyme.expasy.org/EC/6.5.1.7 ec-6.5.1.7]
 +
** [http://enzyme.expasy.org/EC/6.5.1.1 ec-6.5.1.1]
 +
** [http://enzyme.expasy.org/EC/6.5.1.6 ec-6.5.1.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DNA-N]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ13521]]
−
* Gene: [[SJ07337]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04934]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ22529]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ19894]]
+
* Gene: [[SJ15543]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ19893]]
+
* Gene: [[SJ16080]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ12166]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ08856]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ08998]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00426 R00426]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00381 R00381]
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29394 29394]
+
** [http://www.uniprot.org/uniprot/P12000 P12000]
 +
** [http://www.uniprot.org/uniprot/P18858 P18858]
 +
** [http://www.uniprot.org/uniprot/P35970 P35970]
 +
** [http://www.uniprot.org/uniprot/Q9QNG8 Q9QNG8]
 +
** [http://www.uniprot.org/uniprot/Q9PM08 Q9PM08]
 +
** [http://www.uniprot.org/uniprot/Q57635 Q57635]
 +
** [http://www.uniprot.org/uniprot/P49917 P49917]
 +
** [http://www.uniprot.org/uniprot/P49916 P49916]
 +
** [http://www.uniprot.org/uniprot/P37913 P37913]
 +
** [http://www.uniprot.org/uniprot/P51892 P51892]
 +
** [http://www.uniprot.org/uniprot/P16272 P16272]
 +
** [http://www.uniprot.org/uniprot/P33798 P33798]
 +
** [http://www.uniprot.org/uniprot/P00970 P00970]
 +
** [http://www.uniprot.org/uniprot/P00969 P00969]
 +
** [http://www.uniprot.org/uniprot/P04819 P04819]
 +
** [http://www.uniprot.org/uniprot/P19088 P19088]
 +
** [http://www.uniprot.org/uniprot/P07717 P07717]
 +
** [http://www.uniprot.org/uniprot/P26813 P26813]
 +
** [http://www.uniprot.org/uniprot/Q02093 Q02093]
 +
** [http://www.uniprot.org/uniprot/Q23694 Q23694]
 +
** [http://www.uniprot.org/uniprot/Q67480 Q67480]
 +
** [http://www.uniprot.org/uniprot/Q42572 Q42572]
 +
** [http://www.uniprot.org/uniprot/P20492 P20492]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=nucleotide diphosphatase}}
+
{{#set: common-name=dna ligase (atp)}}
−
{{#set: ec-number=ec-3.6.1.9}}
+
{{#set: ec-number=ec-6.5.1.1|ec-6.5.1.7|ec-6.5.1.6}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:04, 5 January 2021

Reaction DNA-LIGASE-ATP-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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