Difference between revisions of "NODOy"

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(Created page with "Category:reaction == Reaction MANNKIN-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.7 ec-2.7.1.7] == Reaction formula == * 1 AT...")
(Created page with "Category:reaction == Reaction STRICTOSIDINE-SYNTHASE-RXN == * direction: ** left-to-right * common-name: ** strictosidine synthase * ec-number: ** [http://enzyme.expasy.or...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction MANNKIN-RXN ==
+
== Reaction STRICTOSIDINE-SYNTHASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** strictosidine synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.1.7 ec-2.7.1.7]
+
** [http://enzyme.expasy.org/EC/4.3.3.2 ec-4.3.3.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[D-mannopyranose]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CPD-15979]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[SECOLOGANIN-CPD]][c] '''+''' 1 [[TRYPTAMINE]][c] '''=>''' 1 [[STRICTOSIDINE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04919]]
+
* Gene: [[SJ12255]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-3861]], mannitol degradation II:
+
* [[PWY-5290]], secologanin and strictosidine biosynthesis:
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''17''' reactions in the full pathway
−
* [[PWY-6140]], CMP-2-keto-3-deoxy-D-glycero-D-galacto-nononate biosynthesis:
+
* [[PWY-6326]], camptothecin biosynthesis:
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6992]], 1,5-anhydrofructose degradation:
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11029 11029]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15013 15013]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01326 R01326]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03738 R03738]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9VAQ9 Q9VAQ9]
 +
** [http://www.uniprot.org/uniprot/P68175 P68175]
 +
** [http://www.uniprot.org/uniprot/P18417 P18417]
 +
** [http://www.uniprot.org/uniprot/P68174 P68174]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-2.7.1.7}}
+
{{#set: common-name=strictosidine synthase}}
 +
{{#set: ec-number=ec-4.3.3.2}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:26, 15 January 2021

Reaction STRICTOSIDINE-SYNTHASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • strictosidine synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5290, secologanin and strictosidine biosynthesis:
    • 2 reactions found over 17 reactions in the full pathway
  • PWY-6326, camptothecin biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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