Difference between revisions of "NPHS"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN-15129 == * direction: ** left-to-right * common-name: ** cystathionine gamma-lyase ** l-cysteine desulfhydrase == Reaction formula == * 1...")
(Created page with "Category:reaction == Reaction L-XYLULOSE-REDUCTASE-RXN == * direction: ** reversible * common-name: ** l-xylulose reductase * ec-number: ** [http://enzyme.expasy.org/EC/1....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-15129 ==
+
== Reaction L-XYLULOSE-REDUCTASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** cystathionine gamma-lyase
+
** l-xylulose reductase
−
** l-cysteine desulfhydrase
+
* ec-number:
 +
** [http://enzyme.expasy.org/EC/1.1.1.10 ec-1.1.1.10]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CYS]][c] '''=>''' 1 [[2-AMINOACRYLATE]][c] '''+''' 1 [[HS]][c]
+
* 1 [[NADP]][c] '''+''' 1 [[XYLITOL]][c] '''<=>''' 1 [[L-XYLULOSE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05357]]
+
* Gene: [[SJ15785]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ05358]]
+
* Gene: [[SJ12149]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ20026]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[LCYSDEG-PWY]], L-cysteine degradation II:
+
* [[PWY-5525]], D-glucuronate degradation I:
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5515]], L-arabinose degradation II:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43037 43037]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17028 17028]
−
{{#set: direction=left-to-right}}
+
* LIGAND-RXN:
−
{{#set: common-name=l-cysteine desulfhydrase|cystathionine gamma-lyase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01904 R01904]
−
{{#set: nb gene associated=3}}
+
{{#set: direction=reversible}}
−
{{#set: nb pathway associated=1}}
+
{{#set: common-name=l-xylulose reductase}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: ec-number=ec-1.1.1.10}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=2}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:24, 15 January 2021

Reaction L-XYLULOSE-REDUCTASE-RXN

  • direction:
    • reversible
  • common-name:
    • l-xylulose reductase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5525, D-glucuronate degradation I:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5515, L-arabinose degradation II:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=NPHS&oldid=115845"