Difference between revisions of "NTDP"

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(Created page with "Category:reaction == Reaction ISOCIT-CLEAV-RXN == * direction: ** reversible * common-name: ** isocitrate lyase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.3.1 ec-4.1...")
(Created page with "Category:reaction == Reaction NTDP == * direction: ** left-to-right * common-name: ** nucleoside-triphosphate diphosphatase (gtp) == Reaction formula == * 1.0 GTP[c] '...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ISOCIT-CLEAV-RXN ==
+
== Reaction NTDP ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** isocitrate lyase
+
** nucleoside-triphosphate diphosphatase (gtp)
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/4.1.3.1 ec-4.1.3.1]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[GLYOX]][c] '''+''' 1 [[SUC]][c]
+
* 1.0 [[GTP]][c] '''+''' 1.0 [[WATER]][c] '''=>''' 1.0 [[GMP]][c] '''+''' 1.0 [[PPI]][c] '''+''' 1.0 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10623]]
+
* Gene: [[SJ19894]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ02830]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05932]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05283]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=left-to-right}}
−
* RHEA:
+
{{#set: common-name=nucleoside-triphosphate diphosphatase (gtp)}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13248 13248]
+
{{#set: nb gene associated=1}}
−
* PIR:
+
{{#set: nb pathway associated=0}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41338 A41338]
+
{{#set: reconstruction category=orthology}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40713 I40713]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JA0155 JA0155]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC6182 JC6182]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26857 S26857]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26858 S26858]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S39953 S39953]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52819 S52819]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S77654 S77654]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04115 T04115]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06353 T06353]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07631 T07631]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07632 T07632]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08046 T08046]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09774 T09774]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09779 T09779]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11209 T11209]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZBYI WZBYI]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCKI WZCKI]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCNIU WZCNIU]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCSI WZCSI]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZECIC WZECIC]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZRPI WZRPI]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00479 R00479]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P28467 P28467]
 
−
** [http://www.uniprot.org/uniprot/P42449 P42449]
 
−
** [http://www.uniprot.org/uniprot/P20699 P20699]
 
−
** [http://www.uniprot.org/uniprot/O13439 O13439]
 
−
** [http://www.uniprot.org/uniprot/P28299 P28299]
 
−
** [http://www.uniprot.org/uniprot/Q12031 Q12031]
 
−
** [http://www.uniprot.org/uniprot/P46831 P46831]
 
−
** [http://www.uniprot.org/uniprot/O24588 O24588]
 
−
** [http://www.uniprot.org/uniprot/P49297 P49297]
 
−
** [http://www.uniprot.org/uniprot/P45456 P45456]
 
−
** [http://www.uniprot.org/uniprot/P45457 P45457]
 
−
** [http://www.uniprot.org/uniprot/Q39577 Q39577]
 
−
** [http://www.uniprot.org/uniprot/Q41084 Q41084]
 
−
** [http://www.uniprot.org/uniprot/Q43097 Q43097]
 
−
** [http://www.uniprot.org/uniprot/P28240 P28240]
 
−
** [http://www.uniprot.org/uniprot/P20014 P20014]
 
−
** [http://www.uniprot.org/uniprot/P17069 P17069]
 
−
** [http://www.uniprot.org/uniprot/P15479 P15479]
 
−
** [http://www.uniprot.org/uniprot/P0A9G6 P0A9G6]
 
−
** [http://www.uniprot.org/uniprot/P25248 P25248]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=isocitrate lyase}}
 
−
{{#set: ec-number=ec-4.1.3.1}}
 
−
{{#set: nb gene associated=4}}
 
−
{{#set: nb pathway associated=3}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Latest revision as of 11:20, 18 March 2021

Reaction NTDP

  • direction:
    • left-to-right
  • common-name:
    • nucleoside-triphosphate diphosphatase (gtp)

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=NTDP&oldid=141180"