Difference between revisions of "NUCLEOSIDE-DIP-KIN-RXN"

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(Created page with "Category:reaction == Reaction RXN-11246 == * direction: ** left-to-right * common-name: ** 3-oxoacyl coa thiolase ** acetyl-coa c-acyltransferase * ec-number: ** [http://e...")
(Created page with "Category:reaction == Reaction SUCL_LPAREN_gdp_RPAREN_m == * direction: ** reversible * common-name: ** succinyl-coa ligase (gdp-forming) == Reaction formula == * 1.0 CO-...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-11246 ==
+
== Reaction SUCL_LPAREN_gdp_RPAREN_m ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 3-oxoacyl coa thiolase
+
** succinyl-coa ligase (gdp-forming)
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** acetyl-coa c-acyltransferase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.3.1.16 ec-2.3.1.16]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CO-A]][c] '''+''' 1 [[CPD-10600]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-201]][c]
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* 1.0 [[CO-A]][m] '''+''' 1.0 [[GTP]][m] '''+''' 1.0 [[SUC]][m] '''<=>''' 1.0 [[GDP]][m] '''+''' 1.0 [[Pi]][m] '''+''' 1.0 [[SUC-COA]][m]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21818]]
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* Gene: [[SJ21782]]
−
** Category: [[annotation]]
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** Category: [[orthology]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ16470]]
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* Gene: [[SJ03269]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ14898]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21817]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ09371]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6435]], 4-hydroxybenzoate biosynthesis III (plants):
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
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{{#set: direction=reversible}}
−
{{#set: common-name=3-oxoacyl coa thiolase|acetyl-coa c-acyltransferase}}
+
{{#set: common-name=succinyl-coa ligase (gdp-forming)}}
−
{{#set: ec-number=ec-2.3.1.16}}
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{{#set: nb gene associated=2}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 19:03, 14 January 2021

Reaction SUCL_LPAREN_gdp_RPAREN_m

  • direction:
    • reversible
  • common-name:
    • succinyl-coa ligase (gdp-forming)

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=NUCLEOSIDE-DIP-KIN-RXN&oldid=102578"