Difference between revisions of "O-SUCCHOMOSERLYASE-RXN"

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(Created page with "Category:reaction == Reaction RXN0-1461 == * direction: ** left-to-right * common-name: ** coproporphyrinogen oxidase ** coproporphyrinogen iii oxidase * ec-number: ** [ht...")
(Created page with "Category:reaction == Reaction 5.3.4.1-RXN == * direction: ** reversible * common-name: ** protein disulfide isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.3.4.1...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-1461 ==
+
== Reaction 5.3.4.1-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** coproporphyrinogen oxidase
+
** protein disulfide isomerase
−
** coproporphyrinogen iii oxidase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.3.3 ec-1.3.3.3]
+
** [http://enzyme.expasy.org/EC/5.3.4.1 ec-5.3.4.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 2 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[Proteins-with-incorrect-disulfides]][c] '''<=>''' 1 [[Proteins-with-correct-disulfides]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11059]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ17411]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11283]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ17455]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02706]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ09446]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08265]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13150]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ05457]]
+
* Gene: [[SJ09445]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ15840]]
+
* Gene: [[SJ16659]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08165]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07095]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13009]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ06720]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16004]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
 
−
** '''5''' reactions found over '''4''' reactions in the full pathway
 
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18258 18258]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
+
** [http://www.uniprot.org/uniprot/P13667 P13667]
−
** [http://www.uniprot.org/uniprot/P36552 P36552]
+
** [http://www.uniprot.org/uniprot/P11598 P11598]
−
** [http://www.uniprot.org/uniprot/O25376 O25376]
+
** [http://www.uniprot.org/uniprot/P21195 P21195]
−
** [http://www.uniprot.org/uniprot/P36553 P36553]
+
** [http://www.uniprot.org/uniprot/P0AEG4 P0AEG4]
−
** [http://www.uniprot.org/uniprot/P33771 P33771]
+
** [http://www.uniprot.org/uniprot/P29828 P29828]
−
** [http://www.uniprot.org/uniprot/P43899 P43899]
+
** [http://www.uniprot.org/uniprot/P32557 P32557]
−
** [http://www.uniprot.org/uniprot/O25824 O25824]
+
** [http://www.uniprot.org/uniprot/Q27780 Q27780]
−
** [http://www.uniprot.org/uniprot/P54304 P54304]
+
** [http://www.uniprot.org/uniprot/P31810 P31810]
−
** [http://www.uniprot.org/uniprot/P11353 P11353]
+
** [http://www.uniprot.org/uniprot/Q9PDE2 Q9PDE2]
−
** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
+
** [http://www.uniprot.org/uniprot/O27777 O27777]
−
** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
+
** [http://www.uniprot.org/uniprot/Q9JSN7 Q9JSN7]
−
** [http://www.uniprot.org/uniprot/P36551 P36551]
+
** [http://www.uniprot.org/uniprot/P45111 P45111]
−
** [http://www.uniprot.org/uniprot/P35055 P35055]
+
** [http://www.uniprot.org/uniprot/P0AEG6 P0AEG6]
−
** [http://www.uniprot.org/uniprot/P43898 P43898]
+
** [http://www.uniprot.org/uniprot/O68904 O68904]
−
** [http://www.uniprot.org/uniprot/P72848 P72848]
+
** [http://www.uniprot.org/uniprot/Q9PCE7 Q9PCE7]
−
** [http://www.uniprot.org/uniprot/P73245 P73245]
+
** [http://www.uniprot.org/uniprot/Q9PDF5 Q9PDF5]
−
** [http://www.uniprot.org/uniprot/P74132 P74132]
+
** [http://www.uniprot.org/uniprot/Q9JSY5 Q9JSY5]
−
** [http://www.uniprot.org/uniprot/Q51676 Q51676]
+
** [http://www.uniprot.org/uniprot/Q9KPF0 Q9KPF0]
−
** [http://www.uniprot.org/uniprot/Q42946 Q42946]
+
** [http://www.uniprot.org/uniprot/P95460 P95460]
−
** [http://www.uniprot.org/uniprot/Q42840 Q42840]
+
** [http://www.uniprot.org/uniprot/P05307 P05307]
−
** [http://www.uniprot.org/uniprot/Q39581 Q39581]
+
** [http://www.uniprot.org/uniprot/P17967 P17967]
−
** [http://www.uniprot.org/uniprot/P95651 P95651]
+
** [http://www.uniprot.org/uniprot/P09102 P09102]
−
** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
+
** [http://www.uniprot.org/uniprot/P07237 P07237]
 +
** [http://www.uniprot.org/uniprot/P08003 P08003]
 +
** [http://www.uniprot.org/uniprot/Q922C8 Q922C8]
 +
** [http://www.uniprot.org/uniprot/P04785 P04785]
 +
** [http://www.uniprot.org/uniprot/P55059 P55059]
 +
** [http://www.uniprot.org/uniprot/Q27553 Q27553]
 +
** [http://www.uniprot.org/uniprot/P30101 P30101]
 +
** [http://www.uniprot.org/uniprot/Q7M1Q4 Q7M1Q4]
 +
** [http://www.uniprot.org/uniprot/Q04815 Q04815]
 +
** [http://www.uniprot.org/uniprot/P39691 P39691]
 +
** [http://www.uniprot.org/uniprot/P34329 P34329]
 +
** [http://www.uniprot.org/uniprot/Q12730 Q12730]
 +
** [http://www.uniprot.org/uniprot/Q43116 Q43116]
 +
** [http://www.uniprot.org/uniprot/Q9TWZ1 Q9TWZ1]
 +
** [http://www.uniprot.org/uniprot/P52588 P52588]
 +
** [http://www.uniprot.org/uniprot/Q17967 Q17967]
 +
** [http://www.uniprot.org/uniprot/P52234 P52234]
 +
** [http://www.uniprot.org/uniprot/O22263 O22263]
 +
** [http://www.uniprot.org/uniprot/P93358 P93358]
 +
** [http://www.uniprot.org/uniprot/P80284 P80284]
 +
** [http://www.uniprot.org/uniprot/P52589 P52589]
 +
** [http://www.uniprot.org/uniprot/O48949 O48949]
 +
** [http://www.uniprot.org/uniprot/P38661 P38661]
 +
** [http://www.uniprot.org/uniprot/O13704 O13704]
 +
** [http://www.uniprot.org/uniprot/O13811 O13811]
 +
** [http://www.uniprot.org/uniprot/Q10057 Q10057]
 +
** [http://www.uniprot.org/uniprot/Q92249 Q92249]
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=coproporphyrinogen iii oxidase|coproporphyrinogen oxidase}}
+
{{#set: common-name=protein disulfide isomerase}}
−
{{#set: ec-number=ec-1.3.3.3}}
+
{{#set: ec-number=ec-5.3.4.1}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=14}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:06, 14 January 2021

Reaction 5.3.4.1-RXN

  • direction:
    • reversible
  • common-name:
    • protein disulfide isomerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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