Difference between revisions of "O-Sialoglycoproteins"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NADH-DEHYDROGENASE-RXN NADH-DEHYDROGENASE-RXN] == * direction: ** reversible * common-name: ** nadh...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13202 RXN-13202] == * direction: ** left-to-right * common-name: ** ammonia-dependent carbamoyl...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NADH-DEHYDROGENASE-RXN NADH-DEHYDROGENASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13202 RXN-13202] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** nadh dehydrogenase
+
** ammonia-dependent carbamoyl-phosphate synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.6.99.3 ec-1.6.99.3]
+
** [http://enzyme.expasy.org/EC/6.3.4.16 ec-6.3.4.16]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Acceptor]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[Donor-H2]][c] '''+''' 1 [[NAD]][c]
+
* 1 [[AMMONIUM]][c] '''+''' 2 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''=>''' 2 [[ADP]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ17851]]
−
* Gene: [[SJ19948]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15310]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ09960]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21333]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18811]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21897]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ10422]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05715]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ18864]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02821]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ14995]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ21137]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ22333]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ19806]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16410]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ19412]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02471]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21017]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ05616]]
+
* Gene: [[SJ15949]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ04738]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O15829 O15829]
 +
** [http://www.uniprot.org/uniprot/O15830 O15830]
 +
** [http://www.uniprot.org/uniprot/P07756 P07756]
 +
** [http://www.uniprot.org/uniprot/P31327 P31327]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00149 R00149]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11359 11359]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10624 10624]
−
* LIGAND-RXN:
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18030 18030]
−
** [http://www.genome.jp/dbget-bin/www_bget?R00281 R00281]
+
{{#set: direction=left-to-right}}
−
* UNIPROT:
+
{{#set: common-name=ammonia-dependent carbamoyl-phosphate synthase}}
−
** [http://www.uniprot.org/uniprot/P21301 P21301]
+
{{#set: ec-number=ec-6.3.4.16}}
−
** [http://www.uniprot.org/uniprot/O05267 O05267]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/P04394 P04394]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/P80861 P80861]
+
{{#set: reconstruction category=annotation|orthology}}
−
** [http://www.uniprot.org/uniprot/P44856 P44856]
 
−
** [http://www.uniprot.org/uniprot/P00393 P00393]
 
−
** [http://www.uniprot.org/uniprot/P52504 P52504]
 
−
** [http://www.uniprot.org/uniprot/O75380 O75380]
 
−
** [http://www.uniprot.org/uniprot/Q7M2F7 Q7M2F7]
 
−
** [http://www.uniprot.org/uniprot/Q7M2F8 Q7M2F8]
 
−
** [http://www.uniprot.org/uniprot/Q7M2G8 Q7M2G8]
 
−
** [http://www.uniprot.org/uniprot/Q7M2F9 Q7M2F9]
 
−
** [http://www.uniprot.org/uniprot/Q7M2G0 Q7M2G0]
 
−
** [http://www.uniprot.org/uniprot/Q7M2G1 Q7M2G1]
 
−
** [http://www.uniprot.org/uniprot/Q7M2G2 Q7M2G2]
 
−
** [http://www.uniprot.org/uniprot/Q7M2G3 Q7M2G3]
 
−
** [http://www.uniprot.org/uniprot/Q7M2G4 Q7M2G4]
 
−
** [http://www.uniprot.org/uniprot/Q7M2G7 Q7M2G7]
 
−
** [http://www.uniprot.org/uniprot/P23934 P23934]
 
−
** [http://www.uniprot.org/uniprot/P42116 P42116]
 
−
** [http://www.uniprot.org/uniprot/P73739 P73739]
 
−
** [http://www.uniprot.org/uniprot/P74614 P74614]
 
−
** [http://www.uniprot.org/uniprot/Q35322 Q35322]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=nadh dehydrogenase}}
 
−
{{#set: ec-number=ec-1.6.99.3}}
 
−
{{#set: nb gene associated=20}}
 
−
{{#set: nb pathway associated=0}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:29, 27 August 2019

Reaction RXN-13202

  • direction:
    • left-to-right
  • common-name:
    • ammonia-dependent carbamoyl-phosphate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-4984, urea cycle: PWY-4984
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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