Difference between revisions of "OHACYL-COA-DEHYDROG-RXN"
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(Created page with "Category:reaction == Reaction TROPINE-DEHYDROGENASE-RXN == * direction: ** reversible * common-name: ** tropinone reductase * ec-number: ** [http://enzyme.expasy.org/EC/1....") |
(Created page with "Category:reaction == Reaction OHACYL-COA-DEHYDROG-RXN == * direction: ** left-to-right * common-name: ** 3-hydroxyacyl-coa dehydrogenase * ec-number: ** [http://enzyme.exp...") |
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(6 intermediate revisions by 2 users not shown) | |||
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction OHACYL-COA-DEHYDROG-RXN == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** 3-hydroxyacyl-coa dehydrogenase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1.1.1. | + | ** [http://enzyme.expasy.org/EC/1.1.1.35 ec-1.1.1.35] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[L-3-HYDROXYACYL-COA]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[3-KETOACYL-COA]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * Gene: [[SJ17348]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ03584]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ01444]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ16180]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ07211]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ21390]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ06127]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ16470]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-5136]], fatty acid β-oxidation II (plant peroxisome): |
− | ** ''' | + | ** '''5''' reactions found over '''5''' reactions in the full pathway |
− | * [[PWY- | + | * [[FAO-PWY]], fatty acid β-oxidation I (generic): |
− | ** ''' | + | ** '''6''' reactions found over '''7''' reactions in the full pathway |
+ | * [[PWY66-391]], fatty acid β-oxidation VI (mammalian peroxisome): | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-7007]], methyl ketone biosynthesis (engineered): | ||
+ | ** '''4''' reactions found over '''6''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22433 22433] |
+ | * PIR: | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A39592 A39592] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49613 A49613] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A55045 A55045] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEPGC DEPGC] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DWRTEP DWRTEP] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4210 JC4210] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4879 JC4879] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0199 JX0199] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S32607 S32607] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S36678 S36678] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40743 S40743] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S54786 S54786] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57651 S57651] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74114 S74114] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10464 T10464] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46866 T46866] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P21177 P21177] | ||
+ | ** [http://www.uniprot.org/uniprot/Q08426 Q08426] | ||
+ | ** [http://www.uniprot.org/uniprot/Q53924 Q53924] | ||
+ | ** [http://www.uniprot.org/uniprot/P07896 P07896] | ||
+ | ** [http://www.uniprot.org/uniprot/Q61425 Q61425] | ||
+ | ** [http://www.uniprot.org/uniprot/Q16836 Q16836] | ||
+ | ** [http://www.uniprot.org/uniprot/P28793 P28793] | ||
+ | ** [http://www.uniprot.org/uniprot/P22414 P22414] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0] | ||
+ | ** [http://www.uniprot.org/uniprot/P34439 P34439] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01373 Q01373] | ||
+ | ** [http://www.uniprot.org/uniprot/P55100 P55100] | ||
+ | ** [http://www.uniprot.org/uniprot/Q39659 Q39659] | ||
+ | ** [http://www.uniprot.org/uniprot/P00348 P00348] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01778 R01778] |
− | {{#set: direction= | + | </div> |
− | {{#set: common-name= | + | {{#set: direction=left-to-right}} |
− | {{#set: ec-number=ec-1.1.1. | + | {{#set: common-name=3-hydroxyacyl-coa dehydrogenase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-1.1.1.35}} |
− | {{#set: nb pathway associated= | + | {{#set: nb gene associated=8}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: nb pathway associated=4}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction category=orthology|annotation}} |
+ | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Latest revision as of 11:20, 18 March 2021
Contents
Reaction OHACYL-COA-DEHYDROG-RXN
- direction:
- left-to-right
- common-name:
- 3-hydroxyacyl-coa dehydrogenase
- ec-number:
Reaction formula
- 1 L-3-HYDROXYACYL-COA[c] + 1 NAD[c] => 1 3-KETOACYL-COA[c] + 1 NADH[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ17348
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ03584
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ01444
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ16180
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ07211
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ21390
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ06127
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ16470
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5136, fatty acid β-oxidation II (plant peroxisome):
- 5 reactions found over 5 reactions in the full pathway
- FAO-PWY, fatty acid β-oxidation I (generic):
- 6 reactions found over 7 reactions in the full pathway
- PWY66-391, fatty acid β-oxidation VI (mammalian peroxisome):
- 6 reactions found over 7 reactions in the full pathway
- PWY-7007, methyl ketone biosynthesis (engineered):
- 4 reactions found over 6 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links