Difference between revisions of "OHACYL-COA-DEHYDROG-RXN"

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(Created page with "Category:reaction == Reaction ISOCIT-CLEAV-RXN == * direction: ** reversible * common-name: ** isocitrate lyase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.3.1 ec-4.1...")
(Created page with "Category:reaction == Reaction OHACYL-COA-DEHYDROG-RXN == * direction: ** left-to-right * common-name: ** 3-hydroxyacyl-coa dehydrogenase * ec-number: ** [http://enzyme.exp...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ISOCIT-CLEAV-RXN ==
+
== Reaction OHACYL-COA-DEHYDROG-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** isocitrate lyase
+
** 3-hydroxyacyl-coa dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.3.1 ec-4.1.3.1]
+
** [http://enzyme.expasy.org/EC/1.1.1.35 ec-1.1.1.35]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[GLYOX]][c] '''+''' 1 [[SUC]][c]
+
* 1 [[L-3-HYDROXYACYL-COA]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[3-KETOACYL-COA]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10623]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ17348]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03584]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ01444]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16180]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07211]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ02830]]
+
* Gene: [[SJ21390]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ05932]]
+
* Gene: [[SJ06127]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ05283]]
+
* Gene: [[SJ16470]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
+
* [[PWY-5136]], fatty acid &beta;-oxidation II (plant peroxisome):
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
+
* [[FAO-PWY]], fatty acid &beta;-oxidation I (generic):
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
+
* [[PWY66-391]], fatty acid &beta;-oxidation VI (mammalian peroxisome):
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7007]], methyl ketone biosynthesis (engineered):
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
Line 37: Line 53:
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13248 13248]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22433 22433]
 
* PIR:
 
* PIR:
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41338 A41338]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A39592 A39592]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40713 I40713]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49613 A49613]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JA0155 JA0155]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A55045 A55045]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC6182 JC6182]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEPGC DEPGC]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26857 S26857]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DWRTEP DWRTEP]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26858 S26858]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4210 JC4210]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S39953 S39953]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4879 JC4879]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52819 S52819]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0199 JX0199]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S77654 S77654]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S32607 S32607]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04115 T04115]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S36678 S36678]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06353 T06353]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40743 S40743]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07631 T07631]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S54786 S54786]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07632 T07632]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57651 S57651]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08046 T08046]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74114 S74114]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09774 T09774]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10464 T10464]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09779 T09779]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46866 T46866]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11209 T11209]
+
* UNIPROT:
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZBYI WZBYI]
+
** [http://www.uniprot.org/uniprot/P21177 P21177]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCKI WZCKI]
+
** [http://www.uniprot.org/uniprot/Q08426 Q08426]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCNIU WZCNIU]
+
** [http://www.uniprot.org/uniprot/Q53924 Q53924]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCSI WZCSI]
+
** [http://www.uniprot.org/uniprot/P07896 P07896]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZECIC WZECIC]
+
** [http://www.uniprot.org/uniprot/Q61425 Q61425]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZRPI WZRPI]
+
** [http://www.uniprot.org/uniprot/Q16836 Q16836]
 +
** [http://www.uniprot.org/uniprot/P28793 P28793]
 +
** [http://www.uniprot.org/uniprot/P22414 P22414]
 +
** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0]
 +
** [http://www.uniprot.org/uniprot/P34439 P34439]
 +
** [http://www.uniprot.org/uniprot/Q01373 Q01373]
 +
** [http://www.uniprot.org/uniprot/P55100 P55100]
 +
** [http://www.uniprot.org/uniprot/Q39659 Q39659]
 +
** [http://www.uniprot.org/uniprot/P00348 P00348]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00479 R00479]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01778 R01778]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P28467 P28467]
 
−
** [http://www.uniprot.org/uniprot/P42449 P42449]
 
−
** [http://www.uniprot.org/uniprot/P20699 P20699]
 
−
** [http://www.uniprot.org/uniprot/O13439 O13439]
 
−
** [http://www.uniprot.org/uniprot/P28299 P28299]
 
−
** [http://www.uniprot.org/uniprot/Q12031 Q12031]
 
−
** [http://www.uniprot.org/uniprot/P46831 P46831]
 
−
** [http://www.uniprot.org/uniprot/O24588 O24588]
 
−
** [http://www.uniprot.org/uniprot/P49297 P49297]
 
−
** [http://www.uniprot.org/uniprot/P45456 P45456]
 
−
** [http://www.uniprot.org/uniprot/P45457 P45457]
 
−
** [http://www.uniprot.org/uniprot/Q39577 Q39577]
 
−
** [http://www.uniprot.org/uniprot/Q41084 Q41084]
 
−
** [http://www.uniprot.org/uniprot/Q43097 Q43097]
 
−
** [http://www.uniprot.org/uniprot/P28240 P28240]
 
−
** [http://www.uniprot.org/uniprot/P20014 P20014]
 
−
** [http://www.uniprot.org/uniprot/P17069 P17069]
 
−
** [http://www.uniprot.org/uniprot/P15479 P15479]
 
−
** [http://www.uniprot.org/uniprot/P0A9G6 P0A9G6]
 
−
** [http://www.uniprot.org/uniprot/P25248 P25248]
 
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=isocitrate lyase}}
+
{{#set: common-name=3-hydroxyacyl-coa dehydrogenase}}
−
{{#set: ec-number=ec-4.1.3.1}}
+
{{#set: ec-number=ec-1.1.1.35}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=8}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction OHACYL-COA-DEHYDROG-RXN

  • direction:
    • left-to-right
  • common-name:
    • 3-hydroxyacyl-coa dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5136, fatty acid β-oxidation II (plant peroxisome):
    • 5 reactions found over 5 reactions in the full pathway
  • FAO-PWY, fatty acid β-oxidation I (generic):
    • 6 reactions found over 7 reactions in the full pathway
  • PWY66-391, fatty acid β-oxidation VI (mammalian peroxisome):
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7007, methyl ketone biosynthesis (engineered):
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=OHACYL-COA-DEHYDROG-RXN&oldid=141161"